Alignments for a candidate for ilvE in Dechloromonas agitata is5

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_027459212.1 K420_RS0117620 branched-chain amino acid transaminase

Query= reanno::psRCH2:GFF445
         (307 letters)



>NCBI__GCF_000519045.1:WP_027459212.1
          Length = 306

 Score =  448 bits (1153), Expect = e-131
 Identities = 210/306 (68%), Positives = 254/306 (83%)

Query: 1   MSMADRDGVIWYDGELVQWRDATTHVLTHTLHYGMGVFEGVRAYNTPDGTAIFRLQAHTD 60
           MSM+DRDG IW DG+LV WRDATTHVLTH+LHYGMGVFEGVRAY T  GTAIFRL+ HT+
Sbjct: 1   MSMSDRDGFIWQDGKLVPWRDATTHVLTHSLHYGMGVFEGVRAYKTERGTAIFRLKEHTE 60

Query: 61  RLFDSAHIMNMPMPYSKEEINEATRAAVRENNLESAYIRPMVFYGSEGMGLRASGLKVHV 120
           RLF SAHI  M MPYS EE+NEA +  +R NNLES Y+RP+ FYGSE MG+   G KVHV
Sbjct: 61  RLFRSAHIFQMAMPYSAEELNEAQKEVIRANNLESGYLRPLAFYGSEKMGVSPKGAKVHV 120

Query: 121 IVAAWHWGAYMGDEALELGIKVRTSSFTRHHVNITMTRAKSNGAYINSMLALQEAISGGA 180
           I+AAW WGAY+G+E ++ GI+++TSS+TRHHVNITM RAK++G Y+NS+LA  EA   G 
Sbjct: 121 IIAAWPWGAYLGEEGMQRGIRIKTSSYTRHHVNITMVRAKASGNYMNSILANNEATGDGY 180

Query: 181 DEALMLDPEGYVAEGSGENIFIIKDGVIYTPEVTACLNGITRGTVLTLAAEHGLKIVEKR 240
           DEAL+LDPEGYV EG+GENIFI+K+G +YTP++TACL GITR TV+ LA E G++++EKR
Sbjct: 181 DEALLLDPEGYVCEGAGENIFIVKNGKLYTPDLTACLEGITRATVMQLAGELGIEVIEKR 240

Query: 241 ITRDEVYIADEAFFTGTAAEVTPIREVDGRAIGIGRRGPITEKLQKAYFDLVTGKTDAHA 300
           ITRDEVY ADEAFFTGTAAEVTPIRE+D R IG G RGPIT+ LQ+ YFD+V G++ AHA
Sbjct: 241 ITRDEVYCADEAFFTGTAAEVTPIRELDNRQIGPGHRGPITKALQEKYFDVVYGRSAAHA 300

Query: 301 EWRTLV 306
           +W  +V
Sbjct: 301 DWLAVV 306


Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 384
Number of extensions: 11
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 306
Length adjustment: 27
Effective length of query: 280
Effective length of database: 279
Effective search space:    78120
Effective search space used:    78120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_027459212.1 K420_RS0117620 (branched-chain amino acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.15550.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15550.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.