Alignments for a candidate for argB in Rhodanobacter denitrificans FW104-10B01

Align N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (characterized)
to candidate WP_027484808.1 LRK54_RS02390 acetylglutamate kinase

Query= reanno::Dyella79:N515DRAFT_3768
         (438 letters)



>NCBI__GCF_021560695.1:WP_027484808.1
          Length = 439

 Score =  723 bits (1866), Expect = 0.0
 Identities = 368/439 (83%), Positives = 394/439 (89%), Gaps = 1/439 (0%)

Query: 1   MEAHKH-TRKTIVRLLSSMGSAKEIQQYLKRFSQLDAKRFAVVKVGGAVLRDDLPALTSS 59
           M+  KH TRKTIVRLLSSMGSAKEIQQYLKRFS+LDAKRFAVVKVGGAVLRD+L  L SS
Sbjct: 1   MDTAKHNTRKTIVRLLSSMGSAKEIQQYLKRFSELDAKRFAVVKVGGAVLRDELADLASS 60

Query: 60  LTFLQQVGLTPIVLHGAGPQLDEELSAAGIQKQTVNGLRVTSPKALAIVRKVFQEQNLRL 119
           LTFLQQVGLTPIVLHGAGPQLDEEL+AAGI KQTV GLRVTSPKAL IVR+VF +QNL+L
Sbjct: 61  LTFLQQVGLTPIVLHGAGPQLDEELAAAGIVKQTVGGLRVTSPKALGIVRRVFMQQNLKL 120

Query: 120 VEALQGMDTRATSVPSGVFTSEYLDRDVYGLVGKVSSINLAPIEASLRAGSIPVIASLGE 179
           VEALQ MDTRAT+VPSGVF + YLDR+  GLVGKV SINLAPIEASL A SIPVIASLGE
Sbjct: 121 VEALQSMDTRATAVPSGVFMASYLDRETLGLVGKVESINLAPIEASLHANSIPVIASLGE 180

Query: 180 TAEGQILNINADFAANELVRVLQPYKIVFLTGTGGLLDDKGRIIDSINLSTEYEHLMAQP 239
           T EGQILN+NAD AANELVR LQPYKIVFLTGTGGLLD +G++IDSINLSTE+E LMAQP
Sbjct: 181 TDEGQILNVNADVAANELVRALQPYKIVFLTGTGGLLDGEGKVIDSINLSTEFEQLMAQP 240

Query: 240 WINGGMRVKIEQIADLLSSLPLTSSVSITQPSELAKELFTHKGSGTLVRRGEKVLRYESW 299
           WINGGMR+KIEQIADLL+ LPLTSSVSIT+PSELAKELFTHKGSGTLVRRGEKVLR++SW
Sbjct: 241 WINGGMRLKIEQIADLLADLPLTSSVSITRPSELAKELFTHKGSGTLVRRGEKVLRFDSW 300

Query: 300 EGIDLARMRELIESSFGRKVVADYFERTRPYRIYVSENYRAAMILTQEEGLAYLDKFAVL 359
           EG+D ARMR LIESSFGR +V DYFERT+P+RIYVSENYRAAMILT E  L YLDKFAVL
Sbjct: 301 EGVDRARMRGLIESSFGRTLVPDYFERTKPFRIYVSENYRAAMILTMEGDLPYLDKFAVL 360

Query: 360 DDAQGEGLGRAVWQVMREENPQLFWRSRHGNQVNIFYYAESDGCFKQERWKVFWYGLKNF 419
           DDAQGEGLGRAVWQVMREENPQLFWRSRH N VNIFYYAESDGC KQ RWKVFWYG+   
Sbjct: 361 DDAQGEGLGRAVWQVMREENPQLFWRSRHRNPVNIFYYAESDGCIKQPRWKVFWYGIDEL 420

Query: 420 GEIERCVAHCAVRPATLMD 438
             I RCVAHCA R  TL+D
Sbjct: 421 DTISRCVAHCAQRQPTLVD 439


Lambda     K      H
   0.319    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 629
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 439
Length adjustment: 32
Effective length of query: 406
Effective length of database: 407
Effective search space:   165242
Effective search space used:   165242
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_027484808.1 LRK54_RS02390 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.14782.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14782.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.