Alignments for a candidate for ilvE in Rhodanobacter denitrificans FW104-10B01

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_027490420.1 LRK54_RS10340 branched-chain amino acid transaminase

Query= reanno::Dyella79:N515DRAFT_2015
         (305 letters)



>NCBI__GCF_021560695.1:WP_027490420.1
          Length = 333

 Score =  355 bits (911), Expect = e-103
 Identities = 177/300 (59%), Positives = 226/300 (75%), Gaps = 3/300 (1%)

Query: 8   WIWQNGQIKPWREATTHVMSHALHYGSSVFEGIRSYATPDGAAIFRLTDHLKRLYQSAKI 67
           ++W NG+IKPW EA+ HV +HALHYGSSVFEG R YATP G A FRL DH +RL++SA++
Sbjct: 5   FLWHNGRIKPWAEASVHVSTHALHYGSSVFEGERVYATPRGPAYFRLADHTRRLFESARV 64

Query: 68  YDMVLPYSQDQIAAACRDVIKQNGLGAAYLRPVAYRGLGGFGLSAE--TPIDVAVAAWPM 125
           Y++ + YS+D+I AAC ++I+ N + +AY+RP+ +RG GG G+ A+   P++VA+ A   
Sbjct: 65  YEIEVGYSEDEINAACLELIRANAMPSAYVRPIVFRGAGGLGVLAKDGAPVEVAIMAMAW 124

Query: 126 GPYLGPEALESGIDACVSSWQRFAPNTIPAGAKAGGNYLSGQLIAREARRLGFGEGIALA 185
           G YLG EA E G D CVSSW R APNTIP+ AKAGGNYLS QLI  EARR G+ EGIAL 
Sbjct: 125 GAYLG-EAAERGADICVSSWHRPAPNTIPSWAKAGGNYLSSQLIGLEARRNGYDEGIALG 183

Query: 186 NTGLLSEGAGENLFLVFDGVLHTTPASASILTGITRHTLITLAREDGIEVIERDIPREYL 245
           + GLLSEGAGENLFLV +G L T P+SA IL GITR +++ LA   GI V ER++PRE L
Sbjct: 184 HGGLLSEGAGENLFLVKNGRLLTPPSSAGILAGITRDSVLALAAGLGIAVEERELPREAL 243

Query: 246 YLCDELLMCGTAAEITPIRSVDGKKIGSGKAGRVTRRMQELFFGLFNGKTNDQWGWLEPV 305
           Y  DE+ M GTAAEITP+RSVD K +G G  G VT+++++ FFGLF+G+T D+ GWL  V
Sbjct: 244 YSADEVFMTGTAAEITPVRSVDRKAVGKGAPGPVTQQLRQAFFGLFDGRTEDRHGWLSVV 303


Lambda     K      H
   0.320    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 350
Number of extensions: 18
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 333
Length adjustment: 27
Effective length of query: 278
Effective length of database: 306
Effective search space:    85068
Effective search space used:    85068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_027490420.1 LRK54_RS10340 (branched-chain amino acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.2030.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2030.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.