Align acetohydroxy-acid synthase small subunit (EC 2.2.1.6) (characterized)
to candidate WP_027722243.1 H589_RS0112015 acetolactate synthase small subunit
Query= metacyc::MONOMER-11901
(169 letters)
>NCBI__GCF_000425265.1:WP_027722243.1
Length = 159
Score = 120 bits (302), Expect = 8e-33
Identities = 65/160 (40%), Positives = 102/160 (63%), Gaps = 3/160 (1%)
Query: 1 MKNTHIISVLVLNKPGVLQRISGLFTRRWYNISSITGGSTDSTDISRMTIVVKGDDKVVE 60
MK T IS L+ N+PGVL S F NI+SI+ G T++ D+SRM I +G D +
Sbjct: 1 MKRT--ISALIRNRPGVLAESSAAFLHHKINITSISCGETENMDVSRMVICAEGSDDDIS 58
Query: 61 QVVKQLNKLIEVIKVIDLDEEECVERELCLIKIYAPTESSKSQVIQYANIFRGNIVDLSQ 120
+V L + VI++ DL +E V+REL LIK+ + S SQ++Q +FR ++V + Q
Sbjct: 59 KVTNDLLAMDFVIQLDDLARKEFVDRELVLIKVDV-DKDSMSQMMQIFEVFRADVVGMGQ 117
Query: 121 ESLTVQITGDKTKISAFIKLVKPMGIKEISRTGLTALMRG 160
+++TV+++GD+ ++ IK+++P GIK + RTG+ AL RG
Sbjct: 118 KTITVELSGDQERVEGLIKILQPFGIKSMCRTGMIALKRG 157
Lambda K H
0.317 0.134 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 6
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 159
Length adjustment: 18
Effective length of query: 151
Effective length of database: 141
Effective search space: 21291
Effective search space used: 21291
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)
Align candidate WP_027722243.1 H589_RS0112015 (acetolactate synthase small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.31281.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31281.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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