Alignments for a candidate for hisA in Maridesulfovibrio zosterae DSM 11974

Align 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (characterized)
to candidate WP_027722313.1 H589_RS0112400 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase

Query= reanno::azobra:AZOBR_RS01680
         (249 letters)



>NCBI__GCF_000425265.1:WP_027722313.1
          Length = 242

 Score =  225 bits (573), Expect = 7e-64
 Identities = 108/237 (45%), Positives = 161/237 (67%)

Query: 1   MIIYPAIDLKDGACVRLLRGEMSQATVFNTEPADQARLFESQGFEWLHLVDLNGAFEGKP 60
           MI++PA+D+KDG CVRL +G+    TVF+++P  QA  +E+QG  +LH+VDL+GAF G P
Sbjct: 1   MILFPAVDIKDGVCVRLSQGQADAVTVFSSDPVAQANYWENQGARYLHVVDLDGAFSGIP 60

Query: 61  VNGKAVESILGAVAIPVQLGGGIRDLKTIAHWLEKGVSRVILGTVALREPELVREACREF 120
            N   ++ I   ++IPVQLGGGIRD++T + ++E GV R+I+GT+AL + E   + C +F
Sbjct: 61  KNFDLIKEICNQLSIPVQLGGGIRDIETASKYIEAGVKRLIIGTMALEDEETFAKLCAKF 120

Query: 121 PGKVAVGIDAREGYVAVAGWAETSTIKALDLALKFEDSGVAAIIYTDINRDGAMGGVNVE 180
           PG++ V +DA  G +   GW E + I  LD+  + E +G A IIYTDI+RDG   GVN+ 
Sbjct: 121 PGQIGVSLDAVNGQLKSRGWVEDAGISILDIIPRMEAAGAAFIIYTDISRDGMQTGVNLI 180

Query: 181 ATSDLAFHLTTPVIASGGVSSIDDLIALKKEEDTGIEGVICGRALYDGRIDPKTALD 237
           A SDL      PVIA+GGV++++D+I L+     G+EG + G+A+Y G +D   A++
Sbjct: 181 ALSDLCAKTKLPVIAAGGVATLEDVINLQPLVSKGLEGAVSGQAIYTGSLDFVEAIE 237


Lambda     K      H
   0.318    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 223
Number of extensions: 6
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 242
Length adjustment: 24
Effective length of query: 225
Effective length of database: 218
Effective search space:    49050
Effective search space used:    49050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)

Align candidate WP_027722313.1 H589_RS0112400 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.27137.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27137.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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