Align Acetolactate synthase isozyme 1 small subunit; EC 2.2.1.6; Acetohydroxy-acid synthase I small subunit; AHAS-I; ALS-I (uncharacterized)
to candidate WP_027722599.1 H589_RS0113930 acetolactate synthase small subunit
Query= curated2:P0ADG0
(96 letters)
>NCBI__GCF_000425265.1:WP_027722599.1
Length = 88
Score = 81.6 bits (200), Expect = 2e-21
Identities = 37/78 (47%), Positives = 56/78 (71%)
Query: 8 NVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLVNDDQRLEQMIS 67
N ++EL VRNH GVM+ + GLF+RR FN+EGI+C P+ D +S + L V D+ +LEQ++
Sbjct: 3 NYVIELLVRNHAGVMSQITGLFSRRNFNLEGIICGPVGDGGESRMILTVADNSKLEQILL 62
Query: 68 QIDKLEDVVKVQRNQSDP 85
Q++KL DV++V + P
Sbjct: 63 QLEKLYDVLQVHKVDDHP 80
Lambda K H
0.324 0.137 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 96
Length of database: 88
Length adjustment: 9
Effective length of query: 87
Effective length of database: 79
Effective search space: 6873
Effective search space used: 6873
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.1 bits)
S2: 39 (19.6 bits)
Align candidate WP_027722599.1 H589_RS0113930 (acetolactate synthase small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.548.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.548.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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