Align Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 3; EC 6.3.5.5 (characterized)
to candidate WP_027722963.1 H589_RS0116020 carbamoyl-phosphate synthase large subunit
Query= SwissProt::Q42601
(1187 letters)
>NCBI__GCF_000425265.1:WP_027722963.1
Length = 1077
Score = 1238 bits (3204), Expect = 0.0
Identities = 651/1090 (59%), Positives = 799/1090 (73%), Gaps = 25/1090 (2%)
Query: 94 KRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALREEGYEVILINSNPATIMTDPETAN 153
KRTD+KKIM++G+GPIVIGQACEFDYSGTQA KAL+EEGYEVIL+NSNPATIMTDP A+
Sbjct: 3 KRTDIKKIMLIGSGPIVIGQACEFDYSGTQALKALKEEGYEVILVNSNPATIMTDPHLAD 62
Query: 154 RTYIAPMTPELVEQVIEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLGA 213
RTYI P+ P + ++IEKERPDALLPT+GGQTALN A+A+AE G LEK+ VELIGA +
Sbjct: 63 RTYIEPIEPGTIAKIIEKERPDALLPTLGGQTALNTALAVAEMGVLEKFNVELIGASVDV 122
Query: 214 IKKAEDRELFKDAMKNIGLKTPPSGIGTTLDECFDIAEKIGEFPLIIRPAFTLGGTGGGI 273
I+KAE RELF+ AM IGLK P S I +D+ ++I FP+IIRPAFTLGGTGGG+
Sbjct: 123 IEKAESRELFRAAMDKIGLKVPTSRIARNIDDVRRCGKEIS-FPIIIRPAFTLGGTGGGV 181
Query: 274 AYNKEEFESICKSGLAASATSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMG 333
AYN E+ E I +G+AAS S+V++E+S+LGWKEYELEVMRD DN VIICSIENID MG
Sbjct: 182 AYNMEDLEEIAMNGIAASLQSEVMLEESILGWKEYELEVMRDRKDNCVIICSIENIDAMG 241
Query: 334 VHTGDSITVAPAQTLTDREYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMIIEMN 393
VHTGDSITVAPAQTLTD EYQ +RD S+AI+REIGVE GGSNVQFAVNP +GE+ IIEMN
Sbjct: 242 VHTGDSITVAPAQTLTDVEYQAMRDASLAIMREIGVETGGSNVQFAVNPANGELAIIEMN 301
Query: 394 PRVSRSSALASKATGFPIAKMAAKLSVGYTLDQIPNDITRKTPASFEPSIDYVVTKIPRF 453
PRVSRSSALASKATGFPIAK+AAKL+VGYTLD+IPNDITR+T ASFEP+IDY V KIPRF
Sbjct: 302 PRVSRSSALASKATGFPIAKIAAKLAVGYTLDEIPNDITRETMASFEPTIDYCVIKIPRF 361
Query: 454 AFEKFPGSQPLLTTQMKSVGESMALGRTFQESFQKALRSLECGFSGWGCAKIKELDWDWD 513
FEKFPG++ LTT MKSVGE+MA+GRTF+E QK LRSLE G G+G K + D+D +
Sbjct: 362 TFEKFPGAEDYLTTAMKSVGETMAIGRTFKECLQKGLRSLEVGMPGFG-KKFDKCDYDRE 420
Query: 514 QLKYSLRVPNPDRIHAIYAAMKKGMKIDEIYELSMVDKWFLTQLKELVDVEQYLMSGTL- 572
L LR PN RI A+ A GM ++EI++L+ +D W+L Q ++L+ E L TL
Sbjct: 421 VLTGLLRKPNSKRIFAVREAFLCGMTLEEIFDLTRIDPWYLHQFEDLITFENELKKFTLE 480
Query: 573 ------SEITKEDLYEVKKRGFSDKQIAFATKTTEEEVRTKRISLGVVPSYKRVDTCAAE 626
L + K+ G+SD Q+A + TEE VR R LG++P+Y VDTCAAE
Sbjct: 481 VGMYSGDAQVPVMLKKAKEYGYSDPQLASMWRETEENVRNFRKDLGLIPTYYLVDTCAAE 540
Query: 627 FEAHTPYMYSSYDVECESAPNNKKKVLILGGGPNRIGQGIEFDYCCCHTSFALQDAGYET 686
FEA+TPY YS+Y+ E+A +KV+ILGGGPNRIGQGIEFDYCCCH+SFAL + G ++
Sbjct: 541 FEAYTPYFYSTYESGQEAAAMADRKVMILGGGPNRIGQGIEFDYCCCHSSFALNEMGVQS 600
Query: 687 IMLNSNPETVSTDYDTSDRLYFEPLTIEDVLNVIDLEKPDGIIVQFGGQTPLKLALPIKH 746
IM+NSNPETVSTDYDTSDRLYFEPLT EDVLN+I+ EKP+G+IVQFGGQTPL LA+P
Sbjct: 601 IMVNSNPETVSTDYDTSDRLYFEPLTYEDVLNIIEFEKPEGVIVQFGGQTPLNLAIP--- 657
Query: 747 YLDKHMPMSLSGAGPVRIWGTSPDSIDAAEDRERFNAILDELKIEQPKGGIAKSEADALA 806
L AG V I GTSPDSID AEDRERF A+L++L ++QP+ G A S DA
Sbjct: 658 ---------LLKAG-VPILGTSPDSIDRAEDRERFQALLEKLDLKQPENGTAMSLDDAQT 707
Query: 807 IAKEVGYPVVVRPSYVLGGRAMEIVYDDSRLITYLENAVQVDPERPVLVDKYLSDAIEID 866
IAK +GYP+V+RPSYVLGGR M+IVY D TY A + PE P+L+DK+L +A+E+D
Sbjct: 708 IAKSLGYPLVLRPSYVLGGRGMDIVYSDEEFDTYFREAAVLSPEHPILIDKFLENAVEVD 767
Query: 867 VDTLTDSYGNVVIGGIMEHIEQAGVHSGDSACMLPTQTIPASCLQTIRTWTTKLAKKLNV 926
VD L+D + G+MEHIE+AG+HSGDSAC+LP T+ ++ I T LA++L++
Sbjct: 768 VDALSDG-EQTYVAGVMEHIEEAGIHSGDSACVLPPHTLSDEIVKEIERQTIALAEELDI 826
Query: 927 CGLMNCQYAITTSGDVFLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLKDLNFEK 986
GLMN Q+A+ V+++E NPRASRTVPFVSKA G LAK A VM G+ LKDL+
Sbjct: 827 VGLMNIQFAV-KDDVVYIIEVNPRASRTVPFVSKATGIQLAKMATKVMLGEKLKDLDPWS 885
Query: 987 EVIPKHVSVKEAVFPFEKFQGCDVILGPEMRSTGEVMSISSEFSSAFAMAQIAAGQKLPL 1046
SVKEAVFPF KF DV+LGPEMRSTGEVM + AF AQ+ AG KLPL
Sbjct: 886 MRKEGFYSVKEAVFPFNKFPNVDVMLGPEMRSTGEVMGMDYTPGLAFMKAQLGAGIKLPL 945
Query: 1047 SGTVFLSLNDMTKPHLEKIAVSFLELGFKIVATSGTAHFLELKGIPVERVLKLHEGRPHA 1106
GTVF+S+ D K + A +F ELGF+I+AT GTA FL KGI E++LK++EGRPH
Sbjct: 946 EGTVFISVKDRDKDAVLPTAENFQELGFRILATGGTADFLNEKGIKTEKILKVNEGRPHV 1005
Query: 1107 ADMVANGQIHLMLITSSGDALDQKDGRQLRQMALAYKVPVITTVAGALATAEGIKSLKSS 1166
D + N I L++ T SG D +++RQ AL Y + TTVAGA A + IK +
Sbjct: 1006 VDFIKNNDIDLLINTPSGKQ-TVTDSKEIRQTALLYGLAYTTTVAGAHAMSLAIKEQRGK 1064
Query: 1167 AIKMTALQDF 1176
+ + LQ +
Sbjct: 1065 GLDVQCLQRY 1074
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3196
Number of extensions: 136
Number of successful extensions: 19
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1187
Length of database: 1077
Length adjustment: 46
Effective length of query: 1141
Effective length of database: 1031
Effective search space: 1176371
Effective search space used: 1176371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_027722963.1 H589_RS0116020 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.24027.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24027.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.