Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_028310016.1 H566_RS0101395 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_000482785.1:WP_028310016.1
Length = 1094
Score = 1427 bits (3694), Expect = 0.0
Identities = 743/1098 (67%), Positives = 869/1098 (79%), Gaps = 32/1098 (2%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPKR+DIKS+LI+GAGPI+IGQACEFDYSGAQACKAL+ EGY+VILVNSNPATIMTDPE
Sbjct: 1 MPKRSDIKSVLIIGAGPIIIGQACEFDYSGAQACKALKAEGYKVILVNSNPATIMTDPET 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
AD TYIEPI W+VV KIIEKERPDA+LPTMGGQTALNCAL+L GVL++F V +IGA
Sbjct: 61 ADVTYIEPITWQVVEKIIEKERPDAILPTMGGQTALNCALDLWHNGVLDKFNVELIGAKP 120
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVG-------FPCIIRPSFT 173
AIDKAEDR +F AM KIGLE+ARSG+AH+M+EA V +G FP IIRPSFT
Sbjct: 121 AAIDKAEDRSKFKEAMTKIGLESARSGVAHSMDEAWDVQRRIGAELGTSGFPVIIRPSFT 180
Query: 174 MGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCS 233
+GG+GGGIAYN EEFE IC RGL+ SPTKELLI+ESLIGWKEYEMEVVRD DNCIIVCS
Sbjct: 181 LGGTGGGIAYNAEEFETICKRGLEASPTKELLIEESLIGWKEYEMEVVRDHADNCIIVCS 240
Query: 234 IENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNG 293
IEN D MG+HTGDSITVAPAQTLTD+EYQ+MRNAS+A+LREIGV+TGGSNVQFAVNP NG
Sbjct: 241 IENLDPMGVHTGDSITVAPAQTLTDREYQLMRNASIAILREIGVDTGGSNVQFAVNPDNG 300
Query: 294 RLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSID 353
R+IVIEMNPRVSRSSALASKATGFPIAK+AAKLA+GYTLDEL N+ITGG TPASFEP+ID
Sbjct: 301 RIIVIEMNPRVSRSSALASKATGFPIAKIAAKLAIGYTLDELRNEITGGATPASFEPTID 360
Query: 354 YVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKV 413
YVVTKIPRF FEKF A+ LTTQMKSVGEVMAIGRT QES QKALRGLEVG G + K
Sbjct: 361 YVVTKIPRFAFEKFPTADSHLTTQMKSVGEVMAIGRTFQESFQKALRGLEVGVDGLNQKT 420
Query: 414 SLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLE 473
+ D EA I EL + G +RIWY+ DAF G +++ V NLT+ID WFLVQI+E+V +E
Sbjct: 421 T--DREA---IEEELGEPGPERIWYVGDAFAQGFTLEEVHNLTHIDPWFLVQIKEIVDIE 475
Query: 474 EKVAEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCA 533
++ + + ++ D L QLKRKGF+D RLA L V EAEIRK R + PV+KRVDTCA
Sbjct: 476 LEIEKRTLADIDRDTLWQLKRKGFSDRRLAYLLDVSEAEIRKHRHGLGVRPVFKRVDTCA 535
Query: 534 AEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDG 593
AEF+T TAY+YSTYEEECEA P T +KIMVLGGGPNRIGQGIEFDYCCVHA+LALREDG
Sbjct: 536 AEFSTTTAYLYSTYEEECEAQP-TGAKKIMVLGGGPNRIGQGIEFDYCCVHAALALREDG 594
Query: 594 YETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARA 653
YETIMVNCNPETVSTDYDTSDRLYFEP+TLEDVLEIV EKP GVIVQYGGQTPLKLA+A
Sbjct: 595 YETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVEKEKPVGVIVQYGGQTPLKLAKA 654
Query: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLV 713
LE+ GVP+IGTSP++ID AEDRERFQ + +L+L+QP N T A+ A EIGYPLV
Sbjct: 655 LESNGVPIIGTSPESIDIAEDRERFQKLLHKLQLRQPPNRTARTEADALALANEIGYPLV 714
Query: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773
VRPSYVLGGRAMEIV+++ DL RY + AV VSND+PVLLD FL+DA+EVDVD I DG+ V
Sbjct: 715 VRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLNDAIEVDVDCIADGQRV 774
Query: 774 LIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVK 833
IGG+MEHIEQAGVHSGDSAC LP Y+LS+ +++Q ++A L V GLMNVQFA++
Sbjct: 775 FIGGVMEHIEQAGVHSGDSACCLPPYSLSEATIAELKRQTVQMAKALNVIGLMNVQFAIQ 834
Query: 834 ---------NNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVT---- 880
+ VY++EVNPRA+RTVP+VSKATG+PLAK+AAR MAG++L QG T
Sbjct: 835 QVPDEAGVVQDVVYVLEVNPRASRTVPYVSKATGLPLAKIAARAMAGQTLDAQGPTYRNG 894
Query: 881 --KEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNST 938
EV PPYYSVKE V PF KFPGVD +LGPEM+STGEVMGVG+TF EAF K+Q+ +++
Sbjct: 895 LQAEVTPPYYSVKEAVFPFVKFPGVDTILGPEMKSTGEVMGVGKTFGEAFVKSQIAASTK 954
Query: 939 M---KKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVH 995
+ KK G LSV+ D+ + +A L + GF+L AT GTA L E G+ VNKV
Sbjct: 955 LPDVKKGGTVFLSVKHQDRAKCYGVAKGLAELGFKLAATKGTAGYLNERGLTVMPVNKVA 1014
Query: 996 EGRPHIQDRIKNGEYTYIINTTSGRR-AIEDSRVIRRSALQYKVHYDTTLNGGFATAMAL 1054
EGRPH+ D IKN E I+NT +R AI DSR IR +ALQ +V TT+ G A +
Sbjct: 1015 EGRPHVVDMIKNNEMVLIVNTVEEKRSAIADSRSIRTTALQARVTVFTTIAGAAAAVEGM 1074
Query: 1055 NADATEKVISVQEMHAQI 1072
A +V +Q++HA++
Sbjct: 1075 REMAQLEVYPLQDLHAKL 1092
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3168
Number of extensions: 135
Number of successful extensions: 19
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1094
Length adjustment: 46
Effective length of query: 1027
Effective length of database: 1048
Effective search space: 1076296
Effective search space used: 1076296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_028310016.1 H566_RS0101395 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.14280.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14280.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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