Alignments for a candidate for cmutase in Derxia gummosa DSM 723

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate WP_028311003.1 H566_RS0107810 prephenate dehydratase

Query= SwissProt::P27603
         (365 letters)



>NCBI__GCF_000482785.1:WP_028311003.1
          Length = 369

 Score =  333 bits (853), Expect = 6e-96
 Identities = 177/360 (49%), Positives = 235/360 (65%), Gaps = 10/360 (2%)

Query: 6   QLKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWVLKHIM 65
           +LK LR RID+LD+ I+ L++ERA  A EV  VK     K   A  +RPEREA VL+ I+
Sbjct: 14  ELKPLRDRIDTLDQTIIQLLNERAGVAMEVGEVK-----KRYHAPAFRPEREAEVLRKIV 68

Query: 66  ELNKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVISKPMA 125
             N GPL  + +  ++REIMS+C ALE   RVA+LGP GTFS+AAA   FG SV  +P A
Sbjct: 69  AGNPGPLRGDSLHFIYREIMSACRALENTTRVAFLGPVGTFSEAAAFAAFGKSVEGQPCA 128

Query: 126 AIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLLVGET 185
           +IDEVFR   AG  +FGVVPVENSTEG VN TLD  L   + I GEVE+ +HH+L+   +
Sbjct: 129 SIDEVFRATEAGTADFGVVPVENSTEGVVNRTLDLLLHTPLRISGEVEIPVHHNLMT-RS 187

Query: 186 TKTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIAGDMAA 245
              D +TRI +HAQ+LAQC  WL  HYP +ER  V+SNA+AA+  + +   A +A   AA
Sbjct: 188 GNMDGVTRICAHAQALAQCATWLSTHYPEIERTPVASNAEAARMARDDATVAGVASAAAA 247

Query: 246 QLYGLSKLAEKIEDRPVNSTRFLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELLMPFHS 305
             +G+  +A  I+D P NSTRF +IG+ +  P+G D+TS++VS  N PGA+H+LL P   
Sbjct: 248 TNFGVHIVARNIQDDPHNSTRFAVIGTLDTAPSGRDQTSLVVSTPNVPGAVHKLLEPLAR 307

Query: 306 NGIDLTRIETRPSR----SGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSYP 361
           N + +TR E+RP+R    +G WTY F+ID  GH +DP +   L ++       KVLGSYP
Sbjct: 308 NEVSMTRFESRPNRTRVGTGVWTYYFYIDIEGHQRDPKVAAALAELRELCAFFKVLGSYP 367


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 340
Number of extensions: 10
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 369
Length adjustment: 30
Effective length of query: 335
Effective length of database: 339
Effective search space:   113565
Effective search space used:   113565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_028311003.1 H566_RS0107810 (prephenate dehydratase)
to HMM TIGR01807 (pheA: chorismate mutase (EC 5.4.99.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.21035.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21035.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.