Alignments for a candidate for thrC in Derxia gummosa DSM 723

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_028311180.1 H566_RS0109010 threonine synthase

Query= BRENDA::Q2SWH9
         (483 letters)



>NCBI__GCF_000482785.1:WP_028311180.1
          Length = 482

 Score =  675 bits (1741), Expect = 0.0
 Identities = 346/482 (71%), Positives = 385/482 (79%)

Query: 1   MNYISTRGAGIGERHTFSDILLGGLAKDGGLYLPSEYPQVSADELARWRTLPYADLAFEI 60
           M Y STRGA      +F DILL GLA DGGLYLP  YPQVSAD+LARWR L YADLAFEI
Sbjct: 1   MKYFSTRGAAHDAPKSFLDILLAGLADDGGLYLPLTYPQVSADDLARWRGLSYADLAFEI 60

Query: 61  LSKFCDDIAAADLRAITRRTYTADVYRHARRGGNAADITPLTTLGTENGAPVSLLELSNG 120
           LS+F DDI A DLRAITR+ YTA+VYR+ R G NAADITPL  LG E G  +SLL LSNG
Sbjct: 61  LSRFADDIPADDLRAITRKVYTAEVYRNVRDGENAADITPLRVLGEEGGTRLSLLALSNG 120

Query: 121 PTLAFKDMAMQLLGNLFEYTLAKHGETLNILGATSGDTGSAAEYAMRGKEGVRVFMLSPH 180
           PTLAFKDMAMQLLG LFEY LA+ G  LNILGATSGDTGSAAEYAMRG++GV+VFMLSP 
Sbjct: 121 PTLAFKDMAMQLLGALFEYALARTGMHLNILGATSGDTGSAAEYAMRGRKGVKVFMLSPK 180

Query: 181 KKMSAFQTAQMYSLQDPNIFNLAVNGVFDDCQDIVKAVSNDHAFKAQQKIGTVNSINWAR 240
            KMSAFQTAQM+SLQDPNIFNLAV GVFDD QDIVKAVSND AFKA+  IGTVNSINWAR
Sbjct: 181 GKMSAFQTAQMFSLQDPNIFNLAVEGVFDDAQDIVKAVSNDIAFKAKWAIGTVNSINWAR 240

Query: 241 VVAQVVYYFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIARMMGLPIEKLVVATNENDV 300
           VVAQVVYYFKGYF AT SNDERVSFTVPSGNFGN+CAGHIAR MGLPI KLV ATNENDV
Sbjct: 241 VVAQVVYYFKGYFEATSSNDERVSFTVPSGNFGNICAGHIARQMGLPIAKLVCATNENDV 300

Query: 301 LDEFFRTGAYRVRSAQDTYHTSSPSMDISKASNFERFVFDLLGRDPARVVQLFRDVEQKG 360
           LDEFFRTG+YR R + +TYHT+SPSMDISKASNFERFVFDL  RD A     +  ++ +G
Sbjct: 301 LDEFFRTGSYRPRKSVETYHTTSPSMDISKASNFERFVFDLFDRDVAAFRATWLKIDSEG 360

Query: 361 GFDLAASGDFARVAEFGFVSGRSTHADRIATIRDVFERYRTMIDTHTADGLKVAREHLRP 420
            F L A        +FGF SGRS+HADR+ATIRD+  RY  ++DTHTADG+K ARE L P
Sbjct: 361 SFTLDADKRALVATKFGFASGRSSHADRLATIRDIDARYGVVVDTHTADGIKAAREQLEP 420

Query: 421 GVPMVVLETAQPIKFGESIREALGQEPSRPAAFDGLEALPQRFEVVDANAQQVKDFIAAH 480
           G+PMVVLETA P KF E+I EALG+   RPA F+ LE+LPQR +V+  + + VK +I  H
Sbjct: 421 GIPMVVLETALPAKFTETIEEALGRPAPRPAGFENLESLPQRSDVIANDVEAVKAYIVKH 480

Query: 481 TG 482
            G
Sbjct: 481 AG 482


Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 752
Number of extensions: 25
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 482
Length adjustment: 34
Effective length of query: 449
Effective length of database: 448
Effective search space:   201152
Effective search space used:   201152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)

Align candidate WP_028311180.1 H566_RS0109010 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.7361.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7361.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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