Alignments for a candidate for argH in Desulfatiglans anilini DSM 4660

Align argininosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate WP_028320085.1 H567_RS0101820 argininosuccinate lyase

Query= ecocyc::ARGSUCCINLYA-MONOMER
         (457 letters)



>NCBI__GCF_000422285.1:WP_028320085.1
          Length = 459

 Score =  459 bits (1180), Expect = e-133
 Identities = 236/450 (52%), Positives = 314/450 (69%), Gaps = 1/450 (0%)

Query: 4   WGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALN 63
           WGGRF +  D    +FN S+ FD RL  QDI+GSVA ++ L   G++  EE A++ EAL 
Sbjct: 6   WGGRFKEETDTLVNRFNASIGFDRRLYAQDILGSVAHARMLARQGIIQEEEAARMIEALG 65

Query: 64  VLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCKD 123
            +   +  R +     D EDIH+ VE  LI+++G LG+KLHTGRSRNDQVA D++L+ +D
Sbjct: 66  EIKRGIE-RGEIPFSEDFEDIHTLVEKNLIERIGALGEKLHTGRSRNDQVALDIRLYVRD 124

Query: 124 TVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRL 183
            + E +    ++Q +L+E  + N D +MPGYTHLQRAQPV  AH  LAYVEML RD +RL
Sbjct: 125 VIHETIALIGRVQESLIELGEKNVDLIMPGYTHLQRAQPVLVAHHLLAYVEMLGRDRARL 184

Query: 184 QDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAA 243
            + L+R++V PLG  ALAG+ + +DRE +A  LGF   +RNS+D+VSDRD +LE L AAA
Sbjct: 185 TEGLRRVNVLPLGSAALAGSTFPLDREGVARELGFEGVSRNSMDAVSDRDFILEFLFAAA 244

Query: 244 IGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGAL 303
             M+HLSR +E+LI +++ E GF+ +SD   +GSS+MPQKKNPD  ELIRGK GRV G L
Sbjct: 245 AVMMHLSRMSEELIIWSSQEFGFITISDGFCTGSSIMPQKKNPDVPELIRGKTGRVYGHL 304

Query: 304 TGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQG 363
            G++ T+KGLPLAYNKDMQEDKEGLFDA DT   CL + A +L  +     R + AA +G
Sbjct: 305 MGLLTTMKGLPLAYNKDMQEDKEGLFDAADTLTLCLEIMARLLREVTFNAERLKAAAAEG 364

Query: 364 YANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYP 423
           Y  AT+LADYLV KGV FREAH +VG  V+ A+ +G  L DLPL E++ FS+VIDE VY 
Sbjct: 365 YLVATDLADYLVGKGVTFREAHGVVGRMVLHAMERGLELHDLPLDEMKGFSRVIDEQVYG 424

Query: 424 ILSLQSCLDKRAAKGGVSPQQVAQAIAFAQ 453
            LS ++C+ +R   GG  P++V +A+A A+
Sbjct: 425 WLSAEACVARRKLTGGTGPERVREALAAAR 454


Lambda     K      H
   0.318    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 525
Number of extensions: 19
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 459
Length adjustment: 33
Effective length of query: 424
Effective length of database: 426
Effective search space:   180624
Effective search space used:   180624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_028320085.1 H567_RS0101820 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.27630.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27630.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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