Alignments for a candidate for ilvD in Desulfatiglans anilini DSM 4660

Align dihydroxy-acid dehydratase subunit (EC 4.2.1.9) (characterized)
to candidate WP_028320187.1 H567_RS0102530 dihydroxy-acid dehydratase

Query= metacyc::MONOMER-11919
         (549 letters)



>NCBI__GCF_000422285.1:WP_028320187.1
          Length = 558

 Score =  599 bits (1545), Expect = e-176
 Identities = 308/552 (55%), Positives = 403/552 (73%), Gaps = 7/552 (1%)

Query: 2   KSDTIKRGIQRAPHRSLLARCGLTDDDFEKPFIGIANSYTDIVPGHIHLRELAEAVKEGV 61
           +SD + +G +RAPHRSLL   G  D + E+P IGIANS+ +I+PGHIHL  L +AVK G+
Sbjct: 5   RSDLMLQGAERAPHRSLLRADGFCDWEMERPIIGIANSFNEIIPGHIHLDRLVDAVKAGI 64

Query: 62  NAAGGVAFEFNTMAICDGIAMNHDGMKYSLASREIVADTVESMAMAHALDGLVLLPTCDK 121
            AAGG    FNT+ +CDGIAMNH+GMKYSL SRE++AD+VE MAMAH  DGLVLL +CDK
Sbjct: 65  YAAGGTPMVFNTIGVCDGIAMNHEGMKYSLPSRELIADSVEIMAMAHPFDGLVLLASCDK 124

Query: 122 IVPGMLMAAARLDIPAIVVTGGPMLPGEFKGRKVDLINVYEGVGTVSAGEMSEDELEELE 181
           I+PGML+AAARL+IPAI ++GGPMLPG   GR++ L  V+E VG + +G ++ ++L   E
Sbjct: 125 IIPGMLIAAARLNIPAIFLSGGPMLPGRVAGREMGLDKVFEAVGALKSGRITSEDLHSYE 184

Query: 182 RCACPGPRSCAGLFTANTMACLTEALGMSLPGCATAHAVSSRKRQIARLSGKRIVEMVQE 241
             ACPG  SC+G+FTANTM+ L+EALGMSLP   +A AV S +  +A+ +G + VE+V+ 
Sbjct: 185 CGACPGAGSCSGMFTANTMSNLSEALGMSLPYNGSAPAVYSDRVHLAKETGMKAVELVRS 244

Query: 242 NLKPTMIMSQEAFENAVMVDLALGGSTNTTLHIPAIAAEIDGLNINLDLFDELSRVIPHI 301
           NL+P  IM++EAF NA+  D+ALGGSTNT LH+PAIA   D +++ L  FD  +  IPH+
Sbjct: 245 NLRPRDIMTREAFGNAIAADMALGGSTNTALHLPAIAYYAD-VDLTLKDFDPYTARIPHL 303

Query: 302 ASISPAGEHMMLDLDRAGGIPAVLKTLEDH--INRECVTCTGRTVQENIENVKVGHRD-- 357
            S++PAG H ++DL  AGG+PA+L  L     I+ E  T  G  + E +E +  G RD  
Sbjct: 304 TSMAPAGPHHIIDLYHAGGVPAILAELGQAGLIDLETRTVYGTRLGEMLERIGAGIRDTK 363

Query: 358 VIRPLDSPVHSEGGLAILRGNLAPRGSVVKQGAVAEDMMVHEGPAKVFNSEDECMEAIFG 417
           VIRP+  PVHS GGLA+L GNLAP G++VKQ AVA +M+ H GPA++F+SE++ + AI G
Sbjct: 364 VIRPVKDPVHSTGGLAVLTGNLAPEGAIVKQAAVAPEMLQHRGPARIFSSEEDAVAAITG 423

Query: 418 GRIDEGDVIVIRYEGPKGGPGMREMLNPTSAIAGMGLER-VALITDGRFSGGTRGPCVGH 476
           GRI +GDV+VIRYEGP+GGPGMREML+PTS +AGMG+++ VALITDGRFSG TRG  +GH
Sbjct: 424 GRIQKGDVLVIRYEGPRGGPGMREMLSPTSVLAGMGMDKDVALITDGRFSGATRGSSIGH 483

Query: 477 VSPEAMEDGPLAAVNDGDIIRIDIPSRKLEVDLSPREIEERLQSAVKPRRSVK-GWLARY 535
           VSPEA   GP+AAV +GD I IDIP + L ++LS   I ERL         V+ G+L RY
Sbjct: 484 VSPEAAAGGPIAAVEEGDTIEIDIPGKSLRLNLSDEAIAERLSRLPAFEPKVRHGYLGRY 543

Query: 536 RKLAGSADTGAV 547
            ++  SAD GAV
Sbjct: 544 ARMVSSADKGAV 555


Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1046
Number of extensions: 46
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 558
Length adjustment: 36
Effective length of query: 513
Effective length of database: 522
Effective search space:   267786
Effective search space used:   267786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_028320187.1 H567_RS0102530 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.24133.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24133.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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