Alignments for a candidate for thrB in Thiomicrorhabdus chilensis DSM 12352

Align Homoserine kinase; HK; HSK; EC 2.7.1.39 (uncharacterized)
to candidate WP_028485576.1 B076_RS0100465 homoserine kinase

Query= curated2:Q9RAM6
         (319 letters)



>NCBI__GCF_000483485.1:WP_028485576.1
          Length = 317

 Score =  291 bits (745), Expect = 1e-83
 Identities = 148/310 (47%), Positives = 199/310 (64%), Gaps = 9/310 (2%)

Query: 1   MSVFTTVSFEQMQQWLKGYDLGELLDLQGIASGITNTNYFVTTD-NG---RYVLTLFEEH 56
           MSV+T V   Q+ ++LK Y++G L   +GI++GI NTNYFV T+ NG   R+VLT+FE H
Sbjct: 1   MSVYTVVDEPQLIEFLKDYEVGSLKSFEGISAGIENTNYFVDTNLNGETKRFVLTIFEHH 60

Query: 57  SAEELPNFLDLMTHLAERGIPCPHPVKNNAGRALGELNGKPAALVSCLAGRSLDNPMPQH 116
           S EELP FLD+M  +AE  IP  HP++  +   L EL GKPAALV  L G  +++P    
Sbjct: 61  SFEELPYFLDIMAFMAEHQIPTAHPIQTLSNGYLKELYGKPAALVERLTGSGVEDPSEIQ 120

Query: 117 CAAIGEVLARMHIAGASFKAGMSNLRGQEWRIATAAKVAPFLDEENHRMLDAQLEFERTF 176
           C  +GE LAR H AGA F++  +N R  +W  AT  ++  FL ++  +M+  +L F+ T 
Sbjct: 121 CGVMGEQLARFHQAGAGFESKRTNDRDLQWMQATFKQIEAFLPDDEKQMITQELAFQSTI 180

Query: 177 DTRRLPRGVIHADLFRDNVLMDGDKVGGVIDFYYACHDALLYDIAIAVNDWC-----VNA 231
           D   LP+GVIHADLF DN L DGD++ G+ID YYAC+   LYD+A+ VNDWC        
Sbjct: 181 DWAHLPQGVIHADLFCDNALFDGDQLSGIIDLYYACNSTFLYDLAVMVNDWCRLHSEQPL 240

Query: 232 DCTLDAVRVRAFLDAYHAIRPLTGEEHAAWPGMLRVAAMRFWLSRLNDLYFPQAGELTHA 291
           +   D  +V A +  Y   RPLT  E  AWP  LR+AA+RF+LSRL DL+ P+ GE+T  
Sbjct: 241 EIHFDQAKVEAMVSTYQKQRPLTDAEQKAWPAALRLAALRFFLSRLKDLHIPREGEMTQI 300

Query: 292 KDPAYFERIL 301
           KDP  F+R+L
Sbjct: 301 KDPKVFKRVL 310


Lambda     K      H
   0.324    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 296
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 317
Length adjustment: 27
Effective length of query: 292
Effective length of database: 290
Effective search space:    84680
Effective search space used:    84680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)

Align candidate WP_028485576.1 B076_RS0100465 (homoserine kinase)
to HMM TIGR00938 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.14642.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14642.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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