Alignments for a candidate for gatA in Thiomicrorhabdus chilensis DSM 12352

Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate WP_028486148.1 B076_RS0103865 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA

Query= SwissProt::O06491
         (485 letters)



>NCBI__GCF_000483485.1:WP_028486148.1
          Length = 484

 Score =  493 bits (1268), Expect = e-144
 Identities = 244/476 (51%), Positives = 330/476 (69%), Gaps = 1/476 (0%)

Query: 8   ITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAVDGRSE 67
           I ++ + +H  EI    L      RI   D ++ A++++  E A   A++ D+ +    E
Sbjct: 6   IKQMSEKLHAGEITSVQLTQHYLDRISKYDTELNAYVSVTPELAMMMAEQADKKL-ASGE 64

Query: 68  HGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKLNMDEF 127
             LL G+P+  KD   T G++T+CSSK+L+NF   YDA VV +L+      +GK NMDEF
Sbjct: 65  ADLLTGIPVAHKDIFCTDGVKTSCSSKMLDNFIAPYDAHVVSQLKKVGMPILGKTNMDEF 124

Query: 128 AMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPASFCG 187
           AMGSS+E+S Y  TKNPWN   VPGGSSGG+AA +AAG  P + G+DTGGSIRQPASFCG
Sbjct: 125 AMGSSSESSYYGPTKNPWNHQAVPGGSSGGAAAVIAAGLAPMATGTDTGGSIRQPASFCG 184

Query: 188 VVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSANVDVPD 247
           + G+KPTYG VSR+G+VA+ASS DQ GP+TR+ +D+A+LL A++G D+ DSTS   +  D
Sbjct: 185 ITGIKPTYGSVSRFGIVAYASSFDQAGPMTRSAQDSAWLLNAMAGFDERDSTSLQREAVD 244

Query: 248 FLSSLTGDIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSLPHSKYALA 307
           + + L   +KGLK+ VP EY GEG+  +    V  A+  +E LGA   EV LP+   A+ 
Sbjct: 245 YAAELGQSLKGLKVGVPAEYFGEGLDADVEAVVRDAIAEVEKLGAEVVEVHLPNKDLAVP 304

Query: 308 TYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIMLGTFALS 367
           +YY+L+ +EAS+NL+RFDG+R+GYR +N  +L DLYK++R+EG G EVKRRIM+G +ALS
Sbjct: 305 SYYVLAPAEASSNLSRFDGVRFGYRCENPKDLEDLYKRSRSEGLGAEVKRRIMVGAYALS 364

Query: 368 SGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDPLTMYANDIL 427
           +GYYDAYY KAQK+R +++ DF   FE  DVI+GP  PTPAF IGE T DP +MY  D+ 
Sbjct: 365 AGYYDAYYLKAQKLRRMVRDDFTKAFESCDVIMGPVAPTPAFNIGEKTDDPTSMYLADLY 424

Query: 428 TIPVNLAGVPGISVPCGLADGLPLGLQIIGKHFDESTVYRVAHAFEQATDHHKAKP 483
           TIPVNLAG+PGISVP G  +  P+GL I+G +F E+ +  VAH ++Q TD H   P
Sbjct: 425 TIPVNLAGLPGISVPAGFVNDRPVGLHIVGPYFSETKLLNVAHQYQQVTDWHTRMP 480


Lambda     K      H
   0.315    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 605
Number of extensions: 24
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 484
Length adjustment: 34
Effective length of query: 451
Effective length of database: 450
Effective search space:   202950
Effective search space used:   202950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_028486148.1 B076_RS0103865 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.20158.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20158.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.