Alignments for a candidate for thrC in Thiomicrorhabdus chilensis DSM 12352

Align Threonine synthase; TS; EC 4.2.3.1 (uncharacterized)
to candidate WP_028486581.1 B076_RS0106365 threonine synthase

Query= curated2:O24924
         (486 letters)



>NCBI__GCF_000483485.1:WP_028486581.1
          Length = 491

 Score =  405 bits (1042), Expect = e-117
 Identities = 224/477 (46%), Positives = 306/477 (64%), Gaps = 9/477 (1%)

Query: 13  KIDFIEAILNPNAPKGGLYTLERFETLQW---QDCLNLSYNDLVECVFERLGLEIPKNLL 69
           ++ F +AIL+P +  GGLY+ +    L     +  L   Y  L   +     ++I ++++
Sbjct: 16  EMTFSQAILSPMSSFGGLYSPKSLPDLGLPFLEKHLQSDYKTLATAILAEFEVDIEQSII 75

Query: 70  ASALKRYENFDNPKNPAPIFALNERLFVQELYHGPSLAFKDMALQPLASLFSNLAVGKNE 129
             AL  Y+ FD+P+NP P+  + + L+V ELYHGP+ AFKDMALQP  ++ S +A  +NE
Sbjct: 76  DEALSLYDQFDDPQNPVPVVKVRDDLYVSELYHGPTRAFKDMALQPFGTVLSAIAKARNE 135

Query: 130 KYLMLVSTSGDTGPATLESLAGMPNVFVVCLYPKDGTSLVQKLQMVTQSASNLKVFGISG 189
           KYL+L +TSGDTGPA L++     NV V CLYP+ GTS VQ+LQMVT++A NLKV GI G
Sbjct: 136 KYLILAATSGDTGPAALDTFRNRENVQVACLYPEGGTSDVQRLQMVTENAPNLKVIGIKG 195

Query: 190 DFDDAQNALKNLLKDDDFNEALKACQLKLSVANSVNFGRIAFQIVYHIWGFLELYKKGAI 249
           DFDDAQ+ALK LL  D F   L+  Q+ LS ANSVNFGRI FQ +YH+  +LEL ++GAI
Sbjct: 196 DFDDAQSALKKLLTSDSFKAKLQENQISLSAANSVNFGRIIFQTIYHLHSYLELIRQGAI 255

Query: 250 NSKEKITLAIPSGNFGNALGAFYAKKMGLNIDKIKVVTNSNDVLREFIETGRYDLTHRSL 309
              EK+ L +PSGNFGNALG +YA KMGL ++KI + +NSN+VL +FI+TG YDL   ++
Sbjct: 256 QMGEKVYLNVPSGNFGNALGGYYAFKMGLPVEKILIASNSNNVLTQFIQTGVYDLRDLNV 315

Query: 310 KQTYSPAMDILKSSNVERALFSLFGFERTLELMQALEEEKFYALKPKELALLQEHFSCAS 369
             T SPAMDILKSSN+ER LF LFG +RT ELM AL++EK YAL   ELA +Q  FS   
Sbjct: 316 IPTSSPAMDILKSSNIERILFDLFGAQRTKELMLALDKEKHYALTQSELAEIQAVFSADF 375

Query: 370 CSDEACLKTIQEVYAEHQYLIDPHTATALNA--SLKTHE--KTLVSATASYEKFPRITLL 425
           C+D+     I++ ++E  YL+DPHTAT   +  + + H   KT+V +TA + KF  I   
Sbjct: 376 CTDDEGEAYIKQAFSE-GYLMDPHTATCFKSYDTCRQHPELKTIVYSTAEWTKFSPIIAN 434

Query: 426 ALNEQKKNDNDKAALETLKNSYNTPDSQRLDDLFERGIKHQEVLKLNEIKSSILLWL 482
           AL   K   +D  AL+ +          ++  LFE  I    V+   +I+  IL +L
Sbjct: 435 ALT-GKSGLHDIEALKVISEQAGVSIPAKIQKLFETEISQSTVIDKRDIEQEILNFL 490


Lambda     K      H
   0.318    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 559
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 491
Length adjustment: 34
Effective length of query: 452
Effective length of database: 457
Effective search space:   206564
Effective search space used:   206564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)

Align candidate WP_028486581.1 B076_RS0106365 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.21249.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21249.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.