Alignments for a candidate for ilvE in Thiomicrorhabdus chilensis DSM 12352

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_028487132.1 B076_RS0109685 branched-chain amino acid transaminase

Query= reanno::psRCH2:GFF445
         (307 letters)



>NCBI__GCF_000483485.1:WP_028487132.1
          Length = 308

 Score =  475 bits (1223), Expect = e-139
 Identities = 225/305 (73%), Positives = 262/305 (85%)

Query: 2   SMADRDGVIWYDGELVQWRDATTHVLTHTLHYGMGVFEGVRAYNTPDGTAIFRLQAHTDR 61
           +MADRDGVIW DGE+V WRDA  HVLTHTLHYGMGVFEGVRAY    GT+IFRL AHTDR
Sbjct: 3   TMADRDGVIWLDGEMVPWRDAKVHVLTHTLHYGMGVFEGVRAYEAEQGTSIFRLDAHTDR 62

Query: 62  LFDSAHIMNMPMPYSKEEINEATRAAVRENNLESAYIRPMVFYGSEGMGLRASGLKVHVI 121
           L +SA I+NM MP+ KE +NEA RA+VRENNL+SAYIRPM FYGSEGMG+RA  LKVHV+
Sbjct: 63  LMNSAKIVNMKMPFDKETLNEAQRASVRENNLKSAYIRPMAFYGSEGMGIRADNLKVHVM 122

Query: 122 VAAWHWGAYMGDEALELGIKVRTSSFTRHHVNITMTRAKSNGAYINSMLALQEAISGGAD 181
           VAAW WGAYMG+E L  GIK+ TSS+TRHHVN+TMT+AKSNG+Y+NSMLALQEA++ G D
Sbjct: 123 VAAWEWGAYMGEENLTRGIKIATSSYTRHHVNVTMTKAKSNGSYMNSMLALQEAVNHGCD 182

Query: 182 EALMLDPEGYVAEGSGENIFIIKDGVIYTPEVTACLNGITRGTVLTLAAEHGLKIVEKRI 241
           EAL+LD +GYVAEGSGEN F++KDGV+YTPE+T CL+GITR T++ LA E G+++VEKRI
Sbjct: 183 EALLLDVDGYVAEGSGENFFMVKDGVLYTPELTCCLDGITRKTIMNLAKEQGIEVVEKRI 242

Query: 242 TRDEVYIADEAFFTGTAAEVTPIREVDGRAIGIGRRGPITEKLQKAYFDLVTGKTDAHAE 301
           TRDEVYIADEAFFTGTAAEVTPIRE+D R IGIG RGPITEKLQ  YFD+V G++  H +
Sbjct: 243 TRDEVYIADEAFFTGTAAEVTPIRELDNRPIGIGSRGPITEKLQSLYFDVVHGRSAKHMD 302

Query: 302 WRTLV 306
           W T V
Sbjct: 303 WLTRV 307


Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 411
Number of extensions: 6
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 308
Length adjustment: 27
Effective length of query: 280
Effective length of database: 281
Effective search space:    78680
Effective search space used:    78680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_028487132.1 B076_RS0109685 (branched-chain amino acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.28779.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28779.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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