Alignments for a candidate for argI in Thiomicrorhabdus chilensis DSM 12352

Align Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 (characterized)
to candidate WP_028487134.1 B076_RS0109695 ornithine carbamoyltransferase

Query= SwissProt::P11724
         (305 letters)



>NCBI__GCF_000483485.1:WP_028487134.1
          Length = 301

 Score =  400 bits (1027), Expect = e-116
 Identities = 188/299 (62%), Positives = 233/299 (77%)

Query: 1   MSVRHFLSFMDYSPEELIGLIRRGSELKDLRNRGVLYEPLKSRVLGMVFEKASTRTRLSF 60
           M++RHFL+  D SP EL  ++ R +ELK +   G ++EPLK++ L M+FEK+STRTR+SF
Sbjct: 1   MTIRHFLTLNDLSPAELNQILLRATELKAMHKAGEIFEPLKNKTLAMIFEKSSTRTRISF 60

Query: 61  EAGMIQLGGQAIFLSPRDTQLGRGEPIGDSARVMSRMLDGVMIRTFAHATLTEFAAHSKV 120
           EAGM QLGG A+FLS  DTQLGRGEPI DSARV+S M+DG+MIRTF H  +   A +S V
Sbjct: 61  EAGMTQLGGHALFLSSNDTQLGRGEPIEDSARVISSMVDGIMIRTFEHDIVETMAQYSSV 120

Query: 121 PVINGLSDDLHPCQLLADMQTFHEHRGSIQGKTVAWIGDGNNMCNSYIEAALKFDFQLRV 180
           P+IN L+DD HPCQLLADMQT+HEHRGSIQGKTV W+GDGNNMC+SYI AA ++DF+LR+
Sbjct: 121 PIINALTDDYHPCQLLADMQTYHEHRGSIQGKTVVWVGDGNNMCHSYINAAKQYDFKLRI 180

Query: 181 ACPEGYEPKAEFVALAGDRLRVVRDPREAVAGAHLVSTDVWASMGQEDEAAARIALFRPY 240
           ACP+GY+P  E V    DR+ +VR+P +A  G+ L+ TDVWASMGQE+E   R   F  Y
Sbjct: 181 ACPQGYDPNMELVQANADRVEIVRNPMDAAQGSDLIVTDVWASMGQEEEQKLREKAFADY 240

Query: 241 QVNAALLDGAADDVLFMHCLPAHRGEEISEELLDDPRSVAWDQAENRLHAQKALLELLI 299
           QVNAAL+  A  D LFMHCLPAHRGEE++ E++D   SV WD+AENRLHAQKALLE L+
Sbjct: 241 QVNAALMQQANQDALFMHCLPAHRGEEVTSEVIDAKDSVVWDEAENRLHAQKALLEFLM 299


Lambda     K      H
   0.322    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 294
Number of extensions: 6
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 301
Length adjustment: 27
Effective length of query: 278
Effective length of database: 274
Effective search space:    76172
Effective search space used:    76172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_028487134.1 B076_RS0109695 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.9554.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9554.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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