Alignments for a candidate for argH in Thiomicrorhabdus chilensis DSM 12352

Align Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 (characterized)
to candidate WP_028487461.1 B076_RS0111545 argininosuccinate lyase

Query= SwissProt::Q9LAE5
         (461 letters)



>NCBI__GCF_000483485.1:WP_028487461.1
          Length = 466

 Score =  441 bits (1134), Expect = e-128
 Identities = 229/456 (50%), Positives = 310/456 (67%), Gaps = 3/456 (0%)

Query: 3   KEQTWSQRFESALHPAIARFNASIGFDIELIEYDLTGSQAHAKMLAHTGIISSEEGEQLV 62
           +E+  S RF  +    +  F ASI FD  + + D+ GS+AHAKML   GI++ +E E ++
Sbjct: 10  QEKLSSARFSESTDAFVEEFTASIQFDNRMYKQDIQGSKAHAKMLTKVGILNEQELEDIL 69

Query: 63  AGLEQIRQEHRQGKFHPGVDAEDVHFAVEKRLTEIVGDVGKKLHTARSRNDQVGTDTRLY 122
            GL QI+ +   GK    +  ED+H  +E RLT ++G  GKKLHT RSRNDQV TD RLY
Sbjct: 70  NGLTQIQADIEAGKVEWSIKQEDIHMNIESRLTNLIGITGKKLHTGRSRNDQVATDIRLY 129

Query: 123 LRDQIQQIKSELREFQGVLLDIAEKHVETLIPGYTHLQRAQPVSLAHHLLAYFQMAQRDW 182
           LRD+I  I  E++     L+++AE+  +T++PG+THLQ AQPV+  HH+LA+F+M +RD 
Sbjct: 130 LRDEIDAILPEMKRLLTGLVELAEREADTIMPGFTHLQTAQPVTFGHHMLAWFEMIKRDI 189

Query: 183 ERLGDVSRRVNISPLGCGALAGTTFPIDRHYTAKLLDFDNIYANSLDGVSDRDFAIEFLC 242
           ERL D  +RVN  PLG  ALAGTT+PIDR YTA+LL F+ I  NSLDGVSDRDFAIEF  
Sbjct: 190 ERLEDCRKRVNTLPLGSAALAGTTYPIDRAYTAELLGFERISENSLDGVSDRDFAIEFTA 249

Query: 243 AASLIMVHLSRLAEEVILWSSEEFRFVILKDSCATGSSIMPQKKNPDVPELVRGKTGRVF 302
            A+ +M+HLSR +EE++LWSS +F+F+ L D   TGSSIMPQKKNPDVPELVRGK+GRV+
Sbjct: 250 FAATLMMHLSRFSEELVLWSSAQFQFIDLPDRFCTGSSIMPQKKNPDVPELVRGKSGRVY 309

Query: 303 GHLQAMLVIMKGLPLAYNKDLQEDKEGLFDSVNTVKASLEAMTILLREGLEFRTQRLAQA 362
           GHL ++L +MK  PLAYNKD QEDKE LFD+V+TV+ SL A   ++   +  + +   +A
Sbjct: 310 GHLMSLLTLMKSQPLAYNKDNQEDKEPLFDTVDTVRGSLRAFADMV-PAIIVKREMTYEA 368

Query: 363 VTEDFSNATDVADYLAARGVPFREAYNLVGKVVKTSIAAGKLLKDLELEEWQQLHPAFAA 422
               FS ATD+ADYL  +G+ FR+++ +VG  V   I +G+ L ++ LE  Q        
Sbjct: 369 AKRGFSTATDLADYLVGKGLAFRDSHEVVGLAVAHGIQSGQDLSEMSLETLQGFCDKIEN 428

Query: 423 DIYEAISPRQVVAARNSHGGTGFVQVSKALIAARAQ 458
           D+++ ++    VAAR+  GGT   QV  A  AARA+
Sbjct: 429 DVFDVLTLEGSVAARDHLGGTAPNQVRAA--AARAK 462


Lambda     K      H
   0.320    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 495
Number of extensions: 15
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 466
Length adjustment: 33
Effective length of query: 428
Effective length of database: 433
Effective search space:   185324
Effective search space used:   185324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_028487461.1 B076_RS0111545 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.7809.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7809.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.