Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_028488154.1 Q394_RS0104070 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
Query= SwissProt::P0A6F1
(382 letters)
>NCBI__GCF_000621325.1:WP_028488154.1
Length = 379
Score = 549 bits (1414), Expect = e-161
Identities = 259/374 (69%), Positives = 306/374 (81%)
Query: 1 MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI 60
M K ALLVLEDG+ FHGR+IG G GEVVFNT++TGYQEILTDPSYSRQ+VTLTYPHI
Sbjct: 1 MNKQALLVLEDGSVFHGRSIGCDGQTTGEVVFNTALTGYQEILTDPSYSRQMVTLTYPHI 60
Query: 61 GNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTR 120
GNVG N D ES+QVHA GL++RD+P + S++R E L +YL+R+ +VAIADIDTR+LTR
Sbjct: 61 GNVGVNQEDCESTQVHAAGLIVRDVPAVYSSWRAEESLPAYLERNKVVAIADIDTRRLTR 120
Query: 121 LLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGG 180
+LREKGAQ GCI+AG N + AL+ AR+FPGL GMDLAKEVT +Y WT+GSW L
Sbjct: 121 ILREKGAQRGCIVAGTNLNVEQALDAARSFPGLKGMDLAKEVTAKASYLWTEGSWQLNPA 180
Query: 181 LPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSN 240
P + F++VAYD+G K NILRMLVDRGCR+T+VPAQT A DVL +NPDG+FLSN
Sbjct: 181 TPRPSTAETAEFNIVAYDYGIKTNILRMLVDRGCRVTVVPAQTPASDVLALNPDGVFLSN 240
Query: 241 GPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDV 300
GPGDP PCDYAI+AI+ LE +P FGICLGHQLL LASGAKT+KMKFGHHG NHPV+DV
Sbjct: 241 GPGDPEPCDYAISAIRTVLENKVPTFGICLGHQLLGLASGAKTIKMKFGHHGANHPVQDV 300
Query: 301 EKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGP 360
+ VMI++QNHGFAVDEA+LP N+R TH+SLFDG+LQGI RTD PA SFQGHPEASPGP
Sbjct: 301 DSKRVMISSQNHGFAVDEASLPVNVRATHRSLFDGSLQGIERTDCPALSFQGHPEASPGP 360
Query: 361 HDAAPLFDHFIELI 374
HD AP+FD FI+L+
Sbjct: 361 HDVAPVFDRFIDLM 374
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 511
Number of extensions: 14
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 379
Length adjustment: 30
Effective length of query: 352
Effective length of database: 349
Effective search space: 122848
Effective search space used: 122848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)
Align candidate WP_028488154.1 Q394_RS0104070 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.16475.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16475.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.