Alignments for a candidate for carA in Desulfogranum mediterraneum DSM 13871

Align Carbamoyl-phosphate synthase small chain, chloroplastic; Carbamoyl-phosphate synthetase glutamine chain; Protein VENOSA 6; EC 6.3.5.5 (characterized)
to candidate WP_028584701.1 G494_RS0111760 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::Q9LVW7
         (430 letters)



>NCBI__GCF_000429965.1:WP_028584701.1
          Length = 371

 Score =  365 bits (937), Expect = e-105
 Identities = 186/371 (50%), Positives = 242/371 (65%), Gaps = 3/371 (0%)

Query: 58  ARLVLEDGSIWPAKSFGAPGTRIAELVFNTSLTGYQEILTDPSYAGQFVLMTNPQIGNTG 117
           A + LEDG++   KSF  PG  + E+VFNTS++GYQE+LTDPSY GQ V MT P IGN G
Sbjct: 3   ALIGLEDGTVISGKSFTGPGEVMGEMVFNTSMSGYQEVLTDPSYTGQLVTMTYPLIGNYG 62

Query: 118 VNPDDEESGQCFLTGLVIRNLSISTSNWRCTKTLADYLTERDIMGVYDLDTRAITRRLRE 177
           VN +D ES        ++R      SN R T TL D L    ++G+   DTR +TR LR+
Sbjct: 63  VNEEDMESAGVHPRAFLMREYQALPSNHRATGTLVDLLQRHQVLGIEGFDTRMLTRLLRK 122

Query: 178 DGSLIGVLSTEQSKTDDELLQMSRSW-DIVGIDLISDVSCKSPYEWVDKTNAEWDFNTNS 236
            G++   +STE     D L+  +RSW  +VG D+++ VSC  PY W  +   E      S
Sbjct: 123 SGAMKAAISTEDLD-GDSLVAKARSWAGLVGRDMVARVSCARPYLWTAEGPREAAAFPAS 181

Query: 237 RDGKSYKVIAYDFGIKQNILRRLSSYGCQITVVPSTFPAAEALKMNPDGILFSNGPGDPS 296
               +++V+A DFG K N LR LS YGCQ+ VVP+T  AAE L + PDGI  SNGPGDP 
Sbjct: 182 GSA-AFRVVALDFGAKYNQLRLLSQYGCQVMVVPATTGAAEILALQPDGIFLSNGPGDPD 240

Query: 297 AVPYAVETVKELLGKVPVYGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNNRTGQVEI 356
            V   VE V++LLGK P++GIC+GHQ+L  A GG T+K+KFGH GGN PV++  TG+VEI
Sbjct: 241 GVQGVVENVRQLLGKKPIFGICLGHQMLALAYGGSTYKLKFGHRGGNQPVKDLTTGKVEI 300

Query: 357 SAQNHNYAVDPASLPGGVEVTHVNLNDGSCAGLSFPEMNVMSLQYHPEASPGPHDSDNAF 416
           +AQNH + VDP SLP  VEVTH+NLND S  G+   +    S+QYHPE +PGPHD++  F
Sbjct: 301 TAQNHGFCVDPESLPPEVEVTHINLNDNSLEGMRHRDYPAFSVQYHPEYAPGPHDAEYLF 360

Query: 417 REFIELMKRSK 427
             FIELM++S+
Sbjct: 361 SRFIELMQQSR 371


Lambda     K      H
   0.316    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 506
Number of extensions: 22
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 371
Length adjustment: 31
Effective length of query: 399
Effective length of database: 340
Effective search space:   135660
Effective search space used:   135660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_028584701.1 G494_RS0111760 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.3750.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3750.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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