Alignments for a candidate for ilvE in Sulfurihydrogenibium subterraneum DSM 15120

Align branched-chain-amino-acid transaminase (EC 2.6.1.42) (characterized)
to candidate WP_028949930.1 Q385_RS0101320 branched-chain amino acid transaminase

Query= BRENDA::F0QW25
         (314 letters)



>NCBI__GCF_000619805.1:WP_028949930.1
          Length = 302

 Score =  304 bits (779), Expect = 2e-87
 Identities = 147/301 (48%), Positives = 211/301 (70%), Gaps = 1/301 (0%)

Query: 14  MKYVWVNGKLIPEKEATIPILTHALHYGTSIFEGIRAYWNSDNNNLYVFRARDHYVRFHD 73
           M  V+   K + E+EA I I T++ HYGT++FEGIRAY+N +N+ +Y    ++HY R   
Sbjct: 1   MGIVYFENKFVEEEEAKISIKTNSFHYGTAVFEGIRAYYNKENDTMYGLFFKEHYQRLFK 60

Query: 74  SAKIMSIKVGYSVDELIDATVELLRANDVHEDVYIRPITFVSASTVNLDIRNLDVTTAII 133
           + +I+++++  S+DEL++ T EL++ N+  EDVYIRPI + S   +   +       AI 
Sbjct: 61  NMRILNMEIEESIDELVEITKELVKRNNHKEDVYIRPIVYFSDLAIGPKLIGYTAKIAIY 120

Query: 134 TVPFGHYLEP-KGIKAKVVSWLRVHNSMFPMKAKVSGIYVNSVIAIIDAKVSGFDEAILL 192
           T+P G Y++  KGIKAKV SW+R++++M P + KV+G YVNS +A  +A ++G +EAI+L
Sbjct: 121 TLPLGDYIDTDKGIKAKVSSWVRLNDNMIPPRLKVTGAYVNSALAKTEALLAGAEEAIVL 180

Query: 193 NRDGYVAEGSGENIFIIKDGILYTPPVYDSILEGITRDTVITIARDLGLTVTEKRITREE 252
           N++G+V+EGS ENIFI++DG L TPPV D ILEGITR  VI IA DLG++V E+ + R E
Sbjct: 181 NKNGFVSEGSAENIFIVRDGKLITPPVSDDILEGITRKAVIDIASDLGISVIERSLARTE 240

Query: 253 LYTADEVFFTGTAAEVTPVVNIDGRVIGNGEPGPIALKVRSYYMDVVHGRVSKYKNWLTP 312
           LY ADEVFF GT A+++PV+ IDGR IG+G  G I  K++  Y D V G+V KYKNW+  
Sbjct: 241 LYVADEVFFCGTGAQISPVIEIDGRKIGSGTVGEITKKIKDIYFDAVRGKVEKYKNWIVE 300

Query: 313 I 313
           I
Sbjct: 301 I 301


Lambda     K      H
   0.321    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 317
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 302
Length adjustment: 27
Effective length of query: 287
Effective length of database: 275
Effective search space:    78925
Effective search space used:    78925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_028949930.1 Q385_RS0101320 (branched-chain amino acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.24415.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24415.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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