Alignments for a candidate for thrC in Sulfurihydrogenibium subterraneum DSM 15120

Align Threonine synthase; TS; EC 4.2.3.1 (uncharacterized)
to candidate WP_028950183.1 Q385_RS0102675 threonine synthase

Query= curated2:Q58860
         (405 letters)



>NCBI__GCF_000619805.1:WP_028950183.1
          Length = 410

 Score =  303 bits (777), Expect = 5e-87
 Identities = 166/393 (42%), Positives = 239/393 (60%), Gaps = 9/393 (2%)

Query: 4   RCIKCGKTYDVDEIIYTCE-CGGLLEIIYDYEEIKDKVSEEKLRKREIGVWRYLEYLPVK 62
           +C +CG  Y V E I+ CE C G LEI+YDY+EIK  +S EK+ K    +WRY++ LPV 
Sbjct: 8   KCKECGADYPV-EPIHVCEFCFGPLEIVYDYQEIKKNISREKIEKGPKSLWRYVDLLPV- 65

Query: 63  DESKIVSLCEGGTPLYRCNNLEKELGIKELYVKNEGAN-PTGSFKDRGMTVGVTRANELG 121
            ++  V L  G TPL +  NL K LG+  LY+K++  N PT SFKDR ++V +++A E G
Sbjct: 66  -DNPTVGLSAGFTPLVKAENLGKVLGLNNLYIKDDSVNHPTLSFKDRVVSVALSKAKEFG 124

Query: 122 VEVVGCASTGNTSASLAAYSARSGKKCIVLLPEGKVALGKLAQAMFYGAKVIQVKGNFDD 181
            +   CASTGN + S+AA++A +G KC V +P   +   K+  ++ +   V+ V GN+DD
Sbjct: 125 FDTAACASTGNLANSVAAHAASAGMKCYVFIPSN-LETNKIIGSLVFNPVVVAVDGNYDD 183

Query: 182 ALDMVKQLAKEKLIYLLN-SINPFRLEGQKTIAFEICDQLNWQVPDRVIVPVGNAGNISA 240
              +  ++A E     +N ++ PF  EG KT+AFE+ +QL W++PD VI P+ +    + 
Sbjct: 184 VNRLSSEIANEFGWAFVNINVRPFYSEGSKTLAFEVAEQLGWKIPDTVIAPLASGSLYTK 243

Query: 241 IWKGFKEFEITGIID-ELPKMTGIQADGAKPIVEAFRKRAKDIIPYKNPETIATAIRIGN 299
           IWKGF E    G+++ + P+M G QA+G  PI +A  K  +D I    P TIA +I IGN
Sbjct: 244 IWKGFNELIEVGLVEGKPPRMLGAQAEGCSPIYQAL-KEGRDFIKPVKPNTIAKSIAIGN 302

Query: 300 PVNAPKALDAIYSSGGYAEAVTDEEIVEAQKLLARKEGIFVEPASASSIAGLKKLLEEGI 359
           P + P A+     SGG  +  TDEEI+E  KLLA+ EGIF E A  ++IA LKK  E G+
Sbjct: 303 PADGPYAVKVAKESGGDIQIATDEEIIEGIKLLAKTEGIFTETAGGTTIAVLKKFAEAGV 362

Query: 360 IDRDERIVCITTGHGLKDPDAAIRASEEPIKIE 392
            D+DE +V   TG+G K  +      E+PI I+
Sbjct: 363 FDKDEVVVAYITGNGYKTMEVLEGKLEKPIHIK 395


Lambda     K      H
   0.317    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 538
Number of extensions: 27
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 410
Length adjustment: 31
Effective length of query: 374
Effective length of database: 379
Effective search space:   141746
Effective search space used:   141746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_028950183.1 Q385_RS0102675 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.6841.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6841.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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