Alignments for a candidate for thrC in Sulfurihydrogenibium subterraneum DSM 15120

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_028950279.1 Q385_RS0103185 threonine synthase

Query= BRENDA::O66740
         (352 letters)



>NCBI__GCF_000619805.1:WP_028950279.1
          Length = 356

 Score =  549 bits (1415), Expect = e-161
 Identities = 265/350 (75%), Positives = 306/350 (87%), Gaps = 2/350 (0%)

Query: 3   RWQGIIKQYKKYLPVDENTPIVTLYEGNTPLIEADNLARAIGFKGK--IYLKYEGLNPTG 60
           +W GII+ Y++YLPV + TPI+TL+EGNTPLI+ADNL++ I       IYLKYEGLNPTG
Sbjct: 4   KWNGIIEAYREYLPVSDKTPIITLHEGNTPLIKADNLSKEIAPDKNLTIYLKYEGLNPTG 63

Query: 61  SFKDRGMTLAISKAVEAGKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLS 120
           SFKDRGMT+AISKA E GK AVICASTGNTSASAAAYAARAG+RAYVLLPKGAVAIGKLS
Sbjct: 64  SFKDRGMTMAISKAKETGKEAVICASTGNTSASAAAYAARAGMRAYVLLPKGAVAIGKLS 123

Query: 121 QAMIYGAKVLAIQGTFDDALNIVRKIGENFPVEIVNSVNPYRIEGQKTAAFEICDTLGEA 180
           QAM+YGAK++A+ G FDDAL IVR+IGE FPVE+VNSVNPYRIEGQKTAAFEI D L +A
Sbjct: 124 QAMVYGAKIIAVMGNFDDALEIVREIGEKFPVEVVNSVNPYRIEGQKTAAFEIVDYLEDA 183

Query: 181 PDYHFIPVGNAGNITAYWKGFKIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKNPQTIA 240
           PD+HFIPVGNAGNITAYWKG+K YY+ GK  K PRM+GWQAEG+APIVKG+PIKNPQTIA
Sbjct: 184 PDFHFIPVGNAGNITAYWKGYKEYYQLGKAKKTPRMIGWQAEGSAPIVKGFPIKNPQTIA 243

Query: 241 TAIKIGNPYSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLI 300
           TAI+IGNPYSW+ AL+AA+ES G IDAVSD EIL AYKL+ASTEGVFCEPASAAS+AG+I
Sbjct: 244 TAIRIGNPYSWQPALQAAKESNGFIDAVSDEEILQAYKLVASTEGVFCEPASAASIAGVI 303

Query: 301 KLVREGFFKGGEVVTCTLTGNGLKDPDTAIKVCEEPITVPPDFDEVVKVL 350
           K  ++G FKGGE + CTLTGNGLKDPDT IK  E+P+ +PPD +E+ + L
Sbjct: 304 KAYKKGLFKGGETIVCTLTGNGLKDPDTVIKASEKPVELPPDLNEIARFL 353


Lambda     K      H
   0.317    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 573
Number of extensions: 24
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 356
Length adjustment: 29
Effective length of query: 323
Effective length of database: 327
Effective search space:   105621
Effective search space used:   105621
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_028950279.1 Q385_RS0103185 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.1431.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1431.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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