Alignments for a candidate for asp-kinase in Sulfurihydrogenibium subterraneum DSM 15120

Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_028950461.1 Q385_RS0104175 aspartate kinase

Query= SwissProt::C3JXY0
         (413 letters)



>NCBI__GCF_000619805.1:WP_028950461.1
          Length = 411

 Score =  454 bits (1167), Expect = e-132
 Identities = 237/403 (58%), Positives = 307/403 (76%), Gaps = 3/403 (0%)

Query: 1   MALIVQKFGGTSVGSVERIEQVADKVKKFRDAGDDLVVVLSAMSGETNRLIDLAKAISGD 60
           M LIVQK+GGTSVG++ERI+ VA K+KK  D G+ +VVV SAM+GET+RLI L + +S  
Sbjct: 1   MPLIVQKYGGTSVGNIERIKNVAKKIKKAVDEGNQVVVVSSAMTGETDRLIGLTRELSS- 59

Query: 61  QQPLPRELDVIVSTGEQVTIALLAMALNKRGVPAVSYTGSQVRILTDSAHTKARILQIDD 120
            +P PRE D++V+TGEQV I L+A+AL + GVPA+S TG QV I+TD+ HTKARI +ID 
Sbjct: 60  -RPNPREQDMVVATGEQVAIGLVAIALQELGVPAISLTGWQVPIITDNVHTKARIKKIDT 118

Query: 121 QKIRTDLKAGRVVVVAGFQGVDEQGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGV 180
            +IR  L  G+VV+VAGFQGV E G+ITTLGRGGSDT+ VALAAALKAD C+IYTDV GV
Sbjct: 119 HRIRKHLDEGKVVIVAGFQGVSEDGDITTLGRGGSDTSAVALAAALKADVCEIYTDVTGV 178

Query: 181 YTTDPRVVSVAQRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYNVPLRVLHSFKEGPGT 240
           +T DPR+V  A+++  I++EEM+EMASLGSKV+QIR+VEF  KY V + V  SF +  GT
Sbjct: 179 FTADPRIVENARKIPVISYEEMMEMASLGSKVMQIRSVEFGAKYGVKIHVRSSFNDEEGT 238

Query: 241 LITIDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISGANIEVDMIVQNV 300
            I ++E E ME+ ++ GI+    E+++T+  VPD PGVA K+   +   NI VDMIVQNV
Sbjct: 239 WI-MEENEEMEKVVVRGISHELKESRITVVRVPDKPGVAAKLFKALGEKNIVVDMIVQNV 297

Query: 301 SHDNTTDFTFTVHRNEYDAAERILQNTAKEIGAREVVGDTKIAKVSIVGVGMRSHAGVAS 360
           SH   TD +FTV++ + D AE I +  AKE+GA +V  + KIAK+S+VG+GM++H+GVA 
Sbjct: 298 SHKGFTDISFTVNKTDADYAEEIAREVAKEVGAEDVERNDKIAKISVVGLGMKTHSGVAG 357

Query: 361 RMFEALAKESINIQMISTSEIKVSVVIEEKYLELAVRALHTAF 403
           +MFE L KE INI  ISTSEIK+S +I+EKY ELAVRALH AF
Sbjct: 358 KMFEVLYKEGINIYAISTSEIKISCLIDEKYAELAVRALHEAF 400


Lambda     K      H
   0.316    0.133    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 468
Number of extensions: 13
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 411
Length adjustment: 31
Effective length of query: 382
Effective length of database: 380
Effective search space:   145160
Effective search space used:   145160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_028950461.1 Q385_RS0104175 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.16946.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16946.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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