Alignments for a candidate for gatA in Thermithiobacillus tepidarius DSM 3134

Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate WP_028989015.1 G579_RS0103105 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA

Query= SwissProt::O06491
         (485 letters)



>NCBI__GCF_000423825.1:WP_028989015.1
          Length = 489

 Score =  500 bits (1288), Expect = e-146
 Identities = 251/477 (52%), Positives = 341/477 (71%), Gaps = 2/477 (0%)

Query: 8   ITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAVDGRSE 67
           +TE+   + ++     +L D    RI AV+  + A++ +  E AR  A+  D       E
Sbjct: 11  LTEMAAGLAERRFSSRELTDALLARIDAVNPGLNAYITVTAETARQAAQAADTR-RAAGE 69

Query: 68  HGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKLNMDEF 127
              L G+PI  KD   T+G+RTTC+S++L +F   YDATVV RL+ A  V +GKLNMDEF
Sbjct: 70  SSPLLGVPIAHKDIFCTEGVRTTCASRMLADFVSPYDATVVGRLKAAGTVMLGKLNMDEF 129

Query: 128 AMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPASFCG 187
           AMGSS E S +   KNPW+ + +PGGSSGGSAAAVAA   P + G+DTGGSIRQPA+ CG
Sbjct: 130 AMGSSNETSHFGPVKNPWDAERIPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPAAMCG 189

Query: 188 VVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSANVDVPD 247
           + GLKPTYGRVSRYG++AFASSLDQ GP+ RT  D A LL A++G D  DSTS+  + PD
Sbjct: 190 ITGLKPTYGRVSRYGMIAFASSLDQGGPMARTAADCALLLNAMAGFDDKDSTSSPAERPD 249

Query: 248 FLSSLTGDIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSLPHSKYALA 307
           F + L   ++GL++ VP+E+ G G+  E    V  A+  LE LGAT + V LP++ +A++
Sbjct: 250 FTAQLNQPLQGLRVGVPEEFFGAGLDPEVGALVQEAIGQLEKLGATVKSVHLPNNPHAVS 309

Query: 308 TYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIMLGTFALS 367
           TYY+L+ +EAS+NLARFDG+RY +R +N  +LIDLYK++RA GFG EV+RRI++GT+ LS
Sbjct: 310 TYYVLAPAEASSNLARFDGVRYTHRAENPKDLIDLYKRSRAAGFGAEVQRRILIGTYVLS 369

Query: 368 SGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDPLTMYANDIL 427
           +GYYDAYY+KAQ+VR LI++DF + F + DVI GPTTP+ AF++GE T DP++MY  DI 
Sbjct: 370 AGYYDAYYRKAQQVRALIRQDFLNAFHEVDVIAGPTTPSAAFRLGEKTADPVSMYLADIY 429

Query: 428 TIPVNLAGVPGISVPCGLAD-GLPLGLQIIGKHFDESTVYRVAHAFEQATDHHKAKP 483
           TI VNLAG+P +S+PCG    GLP+GLQ++G +F+E+ +  VAH ++QATD H+  P
Sbjct: 430 TIAVNLAGIPAMSIPCGFTQAGLPVGLQLMGNYFEEARLLNVAHQYQQATDWHRKAP 486


Lambda     K      H
   0.315    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 533
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 489
Length adjustment: 34
Effective length of query: 451
Effective length of database: 455
Effective search space:   205205
Effective search space used:   205205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_028989015.1 G579_RS0103105 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.12104.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12104.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.