Alignments for a candidate for asd in Thermithiobacillus tepidarius DSM 3134

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_028989191.1 G579_RS0104295 aspartate-semialdehyde dehydrogenase

Query= SwissProt::P23247
         (337 letters)



>NCBI__GCF_000423825.1:WP_028989191.1
          Length = 340

 Score =  419 bits (1077), Expect = e-122
 Identities = 206/335 (61%), Positives = 252/335 (75%), Gaps = 4/335 (1%)

Query: 5   FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDW 64
           +NVA+ GATGAVGETML +L+ R+FPV EL+ L SERS G   +F GK   V N  +FDW
Sbjct: 6   YNVAVLGATGAVGETMLSILESRDFPVGELYPLGSERSAGSKIQFKGKHYTVGNAADFDW 65

Query: 65  SQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNR 124
           SQ  I LFSAGG +SA++AP AA AG VVIDNT+HFRY+ DIPLVVPEVN  A+A + NR
Sbjct: 66  SQADIGLFSAGGSVSAEYAPKAAAAGCVVIDNTAHFRYEPDIPLVVPEVNAHAVARYTNR 125

Query: 125 NIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYP 184
            IIANPNCSTIQML+ALKPI+DA  IER+ V TYQ+VSG GKA I+ELA QT  + N  P
Sbjct: 126 GIIANPNCSTIQMLLALKPIHDAARIERVVVATYQAVSGTGKAAIEELASQTVAIFNQKP 185

Query: 185 AETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYG 244
            E   + ++IAFNC+PQID F DNGYTKEEMKM WETQKI  DP I +  TCVRVPVFYG
Sbjct: 186 VEAKVYPKRIAFNCLPQIDVFQDNGYTKEEMKMTWETQKIMEDPGIHLTATCVRVPVFYG 245

Query: 245 HAEAVHVETRAPIDAEQVMDMLEQTDGIELF---RGADFPTQVRDAGGKDHVLVGRVRND 301
           H+EAV++ T+  + AEQV ++L    G+++    +   +PT + +A   D V VGR+R D
Sbjct: 246 HSEAVNIVTQKKLTAEQVRELLAAAPGVQVMDERKPGGYPTAI-EAANADPVYVGRIRED 304

Query: 302 ISHHSGINLWVVADNVRKGAATNAVQIAELLVRDY 336
           +SH  GINLWVVADNVRKGAA N++QIAE+L+RDY
Sbjct: 305 VSHERGINLWVVADNVRKGAALNSIQIAEILIRDY 339


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 330
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 340
Length adjustment: 28
Effective length of query: 309
Effective length of database: 312
Effective search space:    96408
Effective search space used:    96408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_028989191.1 G579_RS0104295 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.21864.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21864.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.