Alignments for a candidate for argH in Thermithiobacillus tepidarius DSM 3134

Align Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 (characterized)
to candidate WP_028990200.1 G579_RS0110780 argininosuccinate lyase

Query= SwissProt::Q9LAE5
         (461 letters)



>NCBI__GCF_000423825.1:WP_028990200.1
          Length = 463

 Score =  461 bits (1186), Expect = e-134
 Identities = 238/459 (51%), Positives = 309/459 (67%), Gaps = 1/459 (0%)

Query: 1   MTKEQTWSQRFESALHPAIARFNASIGFDIELIEYDLTGSQAHAKMLAHTGIISSEEGEQ 60
           MT+E+ WS RF +     +  F ASI FD  L   D+ GS AHA+MLA  G+++  E EQ
Sbjct: 1   MTEEKPWSGRFTAPTDAFVEAFTASIAFDKRLYAQDIRGSIAHARMLAQAGVLTPTEAEQ 60

Query: 61  LVAGLEQIRQEHRQGKFHPGVDAEDVHFAVEKRLTEIVGDVGKKLHTARSRNDQVGTDTR 120
           +VAGL+Q+R E   G+       ED+H  VE RLT+++G+VGKKLHT RSRNDQV TD R
Sbjct: 61  IVAGLQQVRAEIEAGEMAFSAALEDIHMHVETRLTQLIGEVGKKLHTGRSRNDQVATDVR 120

Query: 121 LYLRDQIQQIKSELREFQGVLLDIAEKHVETLIPGYTHLQRAQPVSLAHHLLAYFQMAQR 180
           LY R+ I +I + +   +  L+D AE+  +T++PG+THLQ AQPV+  HHL+AY +M  R
Sbjct: 121 LYTREAIDEILAGIARLETALMDAAEREADTIMPGFTHLQVAQPVTFGHHLMAYVEMLHR 180

Query: 181 DWERLGDVSRRVNISPLGCGALAGTTFPIDRHYTAKLLDFDNIYANSLDGVSDRDFAIEF 240
           D  RL D  +RVN+ PLG  ALAGTTFPIDR Y A  L FD +  NSLD VSDRDFAIE 
Sbjct: 181 DGMRLLDARKRVNVLPLGAAALAGTTFPIDRWYVAHELGFDFVAENSLDAVSDRDFAIET 240

Query: 241 LCAASLIMVHLSRLAEEVILWSSEEFRFVILKDSCATGSSIMPQKKNPDVPELVRGKTGR 300
           + A +L+MVHLSR AEE+ILWSS  F F+ L DS  TGSSIMPQKKNPDVPELVRGK+ R
Sbjct: 241 VAAIALMMVHLSRFAEELILWSSPSFGFIELSDSFCTGSSIMPQKKNPDVPELVRGKSAR 300

Query: 301 VFGHLQAMLVIMKGLPLAYNKDLQEDKEGLFDSVNTVKASLEAMTILLREGLEFRTQRLA 360
           V G LQ +LV+MK  PLAYNKD QEDKE LFD+++T + SL+    +L  G+  R + + 
Sbjct: 301 VIGALQTLLVLMKAQPLAYNKDNQEDKEPLFDALDTARGSLKVFAEML-PGMTVRREAMR 359

Query: 361 QAVTEDFSNATDVADYLAARGVPFREAYNLVGKVVKTSIAAGKLLKDLELEEWQQLHPAF 420
            A    F+ ATD+ADYL  +G+PFR A+ +VGK V+ ++  G  L+DL LE  +   P  
Sbjct: 360 AAALRGFATATDLADYLVRKGLPFRAAHEVVGKAVRLAVEQGCNLEDLSLEALRGFSPLI 419

Query: 421 AADIYEAISPRQVVAARNSHGGTGFVQVSKALIAARAQI 459
            AD+Y+ ++    V AR   GGT   QV +A+  AR ++
Sbjct: 420 DADVYQVLTLEGSVEARGHIGGTAPAQVRQAIARARTRL 458


Lambda     K      H
   0.320    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 518
Number of extensions: 20
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 463
Length adjustment: 33
Effective length of query: 428
Effective length of database: 430
Effective search space:   184040
Effective search space used:   184040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_028990200.1 G579_RS0110780 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.7893.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7893.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.