Align dihydroxyacid dehydratase (EC 4.2.1.9) (characterized)
to candidate WP_028999050.1 H537_RS0118680 dihydroxy-acid dehydratase
Query= metacyc::MONOMER-18815
(557 letters)
>NCBI__GCF_000430725.1:WP_028999050.1
Length = 559
Score = 877 bits (2267), Expect = 0.0
Identities = 425/557 (76%), Positives = 497/557 (89%), Gaps = 1/557 (0%)
Query: 1 MAFNKRSQNITQGVARSPNRSMYYALGYKKEDFDKPMVGIANGHSTITPCNAGLQRLADA 60
M+ N+RS+NIT+GVAR+PNRSMYYA+GY + DF KPM+G+ANGHSTITPCN+GLQRLADA
Sbjct: 1 MSDNRRSRNITEGVARAPNRSMYYAMGYTEGDFGKPMIGVANGHSTITPCNSGLQRLADA 60
Query: 61 AIDAIKASDANPQVFGTPTISDGMSMGTEGMKYSLISREVIADCIETAAQGQWMDGVVVI 120
A++ ++A+ ANPQ+FGTPTISDGM+MGTEGMKYSL+SREVI+DC+ET GQWMDGV+VI
Sbjct: 61 AVEGLQAAGANPQIFGTPTISDGMAMGTEGMKYSLVSREVISDCVETCVGGQWMDGVLVI 120
Query: 121 GGCDKNMPGGMIALARTNVPGIYVYGGTIKPGNWKGKDLTIVSSFEAVGEFTAGRMSQED 180
GGCDKNMPGGM+ + R NVP IYVYGGTI PG +KG+DL IVS FEAVG+F+AG+MS+ED
Sbjct: 121 GGCDKNMPGGMMGMLRANVPAIYVYGGTILPGRYKGQDLNIVSVFEAVGQFSAGKMSEED 180
Query: 181 FEGVEKNACPSTGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLV 240
F +EK A P +GSCGGMYTANTMSS+FEALGMSL YSST AN EKV+S +A VLV
Sbjct: 181 FCEIEKRAIPGSGSCGGMYTANTMSSAFEALGMSLPYSSTEANVHDEKVESTRRAAAVLV 240
Query: 241 EAIKQDIKPRDIITRKSIENAVALIMATGGSTNAVLHYLAIAHAAEVEWTIDDFERIRRK 300
EA+K+D+KPRDI+T++SIENAVA+IMATGGSTNAVLH+LAIAHAAEVEWTIDDFER+R+K
Sbjct: 241 EAVKKDLKPRDIVTKQSIENAVAVIMATGGSTNAVLHFLAIAHAAEVEWTIDDFERMRKK 300
Query: 301 VPVICNLKPSGQYVATDLHKAGGIPQVMKILLKAGMLHGDCLTITGRTLAEELENVPDTP 360
V V+CNLKPSGQY+A DLH+AGGIP VMK LLKAG+L+GDC+TITG+T+AE L +VPD
Sbjct: 301 VAVLCNLKPSGQYLAVDLHRAGGIPAVMKELLKAGLLNGDCMTITGKTVAENLADVPDL- 359
Query: 361 RADQDVILPIEKALYAEGHLAILKGNLAEEGAVAKITGLKNPVITGPARVFEDEQSAMEA 420
A+QDVI P+ LYA+GHLAILKGNL+ EG VAKITGLKNPVITGPARVF+DEQSA+ A
Sbjct: 360 TAEQDVIRPVSDPLYAQGHLAILKGNLSPEGCVAKITGLKNPVITGPARVFDDEQSALAA 419
Query: 421 ILADKINAGDILVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGFITDGRFSGGTWGMV 480
I+A +I AGD++VLRYLGPKGGPGMPEMLAPT A+IG+GLGESVG ITDGRFSGGTWGMV
Sbjct: 420 IMAGQIKAGDVMVLRYLGPKGGPGMPEMLAPTGALIGQGLGESVGLITDGRFSGGTWGMV 479
Query: 481 VGHVAPEAYVGGTIALVQEGDSITIDAHKLLLQLNVADEELARRRANWKQPAPRYTRGVL 540
VGHVAPEAY GG IALVQEGD+ITIDAH+LLLQLNV + E+ARRRA WKQPAPRYTRGVL
Sbjct: 480 VGHVAPEAYDGGNIALVQEGDAITIDAHQLLLQLNVDEAEIARRRAQWKQPAPRYTRGVL 539
Query: 541 AKFSKLASTASKGAVTD 557
AKF++ A +AS GAV D
Sbjct: 540 AKFARNACSASSGAVLD 556
Lambda K H
0.316 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1109
Number of extensions: 43
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 559
Length adjustment: 36
Effective length of query: 521
Effective length of database: 523
Effective search space: 272483
Effective search space used: 272483
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)
Align candidate WP_028999050.1 H537_RS0118680 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.30179.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30179.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.