Alignments for a candidate for argH in Azohydromonas australica DSM 1124

Align Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 (characterized)
to candidate WP_028999394.1 H537_RS0120880 argininosuccinate lyase

Query= SwissProt::Q9LAE5
         (461 letters)



>NCBI__GCF_000430725.1:WP_028999394.1
          Length = 465

 Score =  447 bits (1150), Expect = e-130
 Identities = 232/459 (50%), Positives = 306/459 (66%), Gaps = 8/459 (1%)

Query: 3   KEQTWSQRFESALHPAIARFNASIGFDIELIEYDLTGSQAHAKMLAHTGIISSEEGEQLV 62
           K Q WS  F   +   + R+ AS+ FD  L + D+ GS AHA ML   GIIS ++   + 
Sbjct: 9   KAQAWSALFSEPMSELVKRYTASVDFDKRLWQADIEGSLAHAAMLQAVGIISEQDLADIR 68

Query: 63  AGLEQIRQEHRQGKFHPGVDAEDVHFAVEKRLTEIVGDVGKKLHTARSRNDQVGTDTRLY 122
            G+ QIR E   G F   +D EDVH  VE RLT++VGD GK+LHT RSRNDQV TD RL+
Sbjct: 69  RGMAQIRAEIEAGSFEWKLDLEDVHLNVEARLTQLVGDAGKRLHTGRSRNDQVATDVRLW 128

Query: 123 LRDQIQQIKSELREFQGVLLDIAEKHVETLIPGYTHLQRAQPVSLAHHLLAYFQMAQRDW 182
           LR +I Q++  L   Q  L+ +AEK+V+T++PG+TH+Q AQPVS AHH+LAY +M  RD 
Sbjct: 129 LRGEIDQLQPLLSGMQRALVSVAEKNVDTILPGFTHMQVAQPVSFAHHMLAYVEMFARDA 188

Query: 183 ERLGDVSRRVNISPLGCGALAGTTFPIDRHYTAKLLDFDNIYANSLDGVSDRDFAIEFLC 242
           ERL D+ +RVN  PLG  ALAGT++P+DR   A+LL FD +  NSLD VSDRDFAIEF  
Sbjct: 189 ERLADLRKRVNRLPLGSAALAGTSYPLDREMVARLLGFDAVTQNSLDAVSDRDFAIEFTA 248

Query: 243 AASLIMVHLSRLAEEVILWSSEEFRFVILKDSCATGSSIMPQKKNPDVPELVRGKTGRVF 302
            AS+ M+H+SRLAEE++LW S+ F F+ L D   TGSSIMPQK+NPDV EL RGKTGRV+
Sbjct: 249 FASITMMHVSRLAEEIVLWMSQNFAFIDLADRYCTGSSIMPQKRNPDVAELARGKTGRVY 308

Query: 303 GHLQAMLVIMKGLPLAYNKDLQEDKEGLFDSVNTVKASLEAMTILLREGLEFRTQRLAQA 362
           GHL A+L +MKG PL YNKD QEDKE LFD+V+T++ +L  M  ++ EG+  + + +  A
Sbjct: 309 GHLTALLTLMKGQPLTYNKDNQEDKEPLFDAVDTLRDTLRIMAEMV-EGILVKPEAMESA 367

Query: 363 VTEDFSNATDVADYLAARGVPFREAYNLVGKVVKTSIAAGKLLKDLELEEWQQLHPAFAA 422
               ++ ATD+ADYL  +G+PFR+A+ +V   VK  +  G  L +L L+  Q  H     
Sbjct: 368 ARRGYATATDLADYLVKKGLPFRDAHEVVAHAVKVGLQRGVDLSELPLDVLQLFHATIGE 427

Query: 423 DIYEAISPRQVVAARNSHGGTGFVQVSKALIAARAQIDQ 461
           D+YE ++ R  + AR   GGT  VQV       RAQI++
Sbjct: 428 DVYEVLTLRGSLQARQVLGGTAPVQV-------RAQIER 459


Lambda     K      H
   0.320    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 532
Number of extensions: 21
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 465
Length adjustment: 33
Effective length of query: 428
Effective length of database: 432
Effective search space:   184896
Effective search space used:   184896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_028999394.1 H537_RS0120880 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.23654.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23654.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.