Alignments for a candidate for leuB in Sedimenticola selenatireducens DSM 17993

Align 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 (characterized)
to candidate WP_029132623.1 A3GO_RS0105910 3-isopropylmalate dehydrogenase

Query= SwissProt::Q56268
         (358 letters)



>NCBI__GCF_000428045.1:WP_029132623.1
          Length = 360

 Score =  429 bits (1104), Expect = e-125
 Identities = 225/355 (63%), Positives = 269/355 (75%), Gaps = 2/355 (0%)

Query: 2   KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQL 61
           K I +  GDGIG EIV  A +VL  +     L +   E L+GG A DA+  PLP A+L L
Sbjct: 3   KNILVLPGDGIGQEIVTEAVKVLACLRDDYGLDIEMDEALIGGTAYDAAGHPLPEATLNL 62

Query: 62  AMAADAVILGAVGGPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRP 121
           A  ADAV+LGAVGGP+W+    + RPE+GLL +RK L L+ANLRPA ++PQL DAS LRP
Sbjct: 63  AREADAVLLGAVGGPKWEPLDISVRPEKGLLGIRKELGLFANLRPAILYPQLADASTLRP 122

Query: 122 ELVRDVDILVVRELTGDIYFGQPRGLEVID-GKRRGFNTMVYDEDEIRRIAHVAFRAAQG 180
           E+V  +DI++VRELTG IYFGQPRG+ V++ G++ GFNT++Y E E+ RI  VA   A  
Sbjct: 123 EVVSGLDIMIVRELTGGIYFGQPRGVRVLENGEKEGFNTLIYKESEVDRIVRVAMDIAMK 182

Query: 181 RRKQLCSVDKANVLETTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLT 240
           R K++CSVDKANVLE T +WREV  +V  DYP+V LSHMYVDNAAMQL+RAP QFDV++T
Sbjct: 183 RNKRVCSVDKANVLECTEMWREVAVKVGADYPEVELSHMYVDNAAMQLVRAPKQFDVMVT 242

Query: 241 GNMFGDILSDEASQLTGSIGMLPSASLGE-GRAMYEPIHGSAPDIAGQDKANPLATILSV 299
            NMFGDILSD AS LTGSIGMLPSASL E G+ MYEPIHGSAPDIAGQ  ANPLATILSV
Sbjct: 243 TNMFGDILSDCASMLTGSIGMLPSASLDENGKGMYEPIHGSAPDIAGQGVANPLATILSV 302

Query: 300 AMMLRHSLNAEPWAQRVEAAVQRVLDQGLRTADIAAPGTPVIGTKAMGAAVVNAL 354
           AMMLR+SL+ +  A RVE AV + LDQGLRT DI + GT  +GT+AMG AVV AL
Sbjct: 303 AMMLRYSLDEDAMADRVEQAVNKTLDQGLRTPDIYSEGTRKVGTEAMGDAVVAAL 357


Lambda     K      H
   0.320    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 422
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 360
Length adjustment: 29
Effective length of query: 329
Effective length of database: 331
Effective search space:   108899
Effective search space used:   108899
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_029132623.1 A3GO_RS0105910 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.18455.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18455.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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