Alignments for a candidate for carA in Sedimenticola selenatireducens DSM 17993

Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_029134988.1 A3GO_RS0120520 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P0A6F1
         (382 letters)



>NCBI__GCF_000428045.1:WP_029134988.1
          Length = 380

 Score =  571 bits (1471), Expect = e-167
 Identities = 271/377 (71%), Positives = 319/377 (84%), Gaps = 2/377 (0%)

Query: 1   MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI 60
           M K A+LVLEDGT F G +IGA G  +GEVVFNT++TGYQEILTDPSY RQIVTLTYPHI
Sbjct: 1   MSKPAILVLEDGTVFRGESIGADGQTIGEVVFNTAITGYQEILTDPSYCRQIVTLTYPHI 60

Query: 61  GNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTR 120
           GN GTND DEES  ++A GL+IRDLPL+ASN+R+   L  YL+ + +VAIA IDTRKLTR
Sbjct: 61  GNTGTNDEDEESGDIYAAGLIIRDLPLLASNWRSQRTLDQYLRENGVVAIAGIDTRKLTR 120

Query: 121 LLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGG 180
           +LREKGAQ+GCI+AGD P+ A AL+ AR+FPGL GMDLAKEVTT   Y W QG+W+L GG
Sbjct: 121 ILREKGAQSGCIMAGDQPNEAAALDAARSFPGLKGMDLAKEVTTHTPYEWAQGTWSLEGG 180

Query: 181 LPEAKK--EDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL 238
           LPE+    E+ LP HVVAYD+G KRNILRMLVDRGCR+T+VPAQT A+ VL++ P+G+FL
Sbjct: 181 LPESPGHIEESLPTHVVAYDYGIKRNILRMLVDRGCRVTVVPAQTPADKVLELRPNGVFL 240

Query: 239 SNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVK 298
           SNGPGDP PCDYAI AI+  ++T IPVFGICLGHQLLALASGAKTVKMKFGHHG NHPV+
Sbjct: 241 SNGPGDPEPCDYAIEAIKTIVDTGIPVFGICLGHQLLALASGAKTVKMKFGHHGANHPVQ 300

Query: 299 DVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASP 358
           + +  VVMI++QNHGFAVDE +LPANL  T++SLFD +LQGIHRTD+PAF FQGHPEASP
Sbjct: 301 NQQDKVVMISSQNHGFAVDEQSLPANLEATYRSLFDDSLQGIHRTDRPAFGFQGHPEASP 360

Query: 359 GPHDAAPLFDHFIELIE 375
           GPHD AP+FDHFIEL++
Sbjct: 361 GPHDVAPVFDHFIELMQ 377


Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 537
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 380
Length adjustment: 30
Effective length of query: 352
Effective length of database: 350
Effective search space:   123200
Effective search space used:   123200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_029134988.1 A3GO_RS0120520 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.25960.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25960.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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