Alignments for a candidate for ilvH in Hydrogenovibrio marinus DSM 11271

Align acetolactate synthase (subunit 1/2) (EC 2.2.1.6) (characterized)
to candidate WP_029909963.1 P166_RS0106255 acetolactate synthase small subunit

Query= BRENDA::P00894
         (163 letters)



>NCBI__GCF_000711315.1:WP_029909963.1
          Length = 163

 Score =  189 bits (480), Expect = 2e-53
 Identities = 94/160 (58%), Positives = 131/160 (81%), Gaps = 1/160 (0%)

Query: 1   MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQI 60
           M+ I+S+L+ENESGALSRV GLFS RGYNI++LTVAPT+D T+SR+T+ + G++  +EQI
Sbjct: 1   MKHIISMLMENESGALSRVAGLFSARGYNIQTLTVAPTEDETISRLTLVSYGNDYQIEQI 60

Query: 61  EKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLY 120
            K L++LVDV++V ++ +G+H+ERE+MLVK++A+G  R+EVKR  +IFRG I+DVT ++Y
Sbjct: 61  VKHLNRLVDVIKVVDITEGSHIERELMLVKVKATGAMREEVKRLADIFRGTIVDVTANIY 120

Query: 121 TVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGDK 160
           +VQL G S KLDAF+ ++ D   IVE  RSGVVGL RG+K
Sbjct: 121 SVQLVGESQKLDAFIEAL-DQGVIVETVRSGVVGLMRGEK 159


Lambda     K      H
   0.318    0.136    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 119
Number of extensions: 4
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 163
Length adjustment: 18
Effective length of query: 145
Effective length of database: 145
Effective search space:    21025
Effective search space used:    21025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)

Align candidate WP_029909963.1 P166_RS0106255 (acetolactate synthase small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.19921.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19921.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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