Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_029910153.1 P166_RS0106645 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
Query= SwissProt::P0A6F1
(382 letters)
>NCBI__GCF_000711315.1:WP_029910153.1
Length = 378
Score = 531 bits (1367), Expect = e-155
Identities = 258/376 (68%), Positives = 302/376 (80%), Gaps = 6/376 (1%)
Query: 5 ALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVG 64
ALL LEDGT F G ++GA G VGEVVFNTS+TGYQEILTDPSY +QIVTLTYPHIGNVG
Sbjct: 4 ALLALEDGTLFWGTSLGAEGKTVGEVVFNTSLTGYQEILTDPSYFKQIVTLTYPHIGNVG 63
Query: 65 TNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLRE 124
N DEES + AQGL+++D P + SNFR + L YLK ++VAI DIDTRKLTRLLR+
Sbjct: 64 VNGEDEESPSIMAQGLIVKDCPALMSNFRAEKSLPDYLKEQSVVAITDIDTRKLTRLLRD 123
Query: 125 KGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGG--LP 182
KGAQ+G I+ GD DA A+ +AR+F GL G+DLAKEVTT ++Y W +GSW L G +P
Sbjct: 124 KGAQSGIIVTGDEIDAEAAVAEARSFSGLKGLDLAKEVTTEKSYQWKEGSWALGEGHKIP 183
Query: 183 EAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGP 242
K + + VVA+D+G KRNILRMLVDRGC L +VPA+T A+DVL MNPDG+FLSNGP
Sbjct: 184 VTKPQ----YKVVAFDYGVKRNILRMLVDRGCELIVVPAKTPAKDVLAMNPDGVFLSNGP 239
Query: 243 GDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEK 302
GDP PCDYAI AIQ+ LET+IPVFGICLGHQLLALASGAKT KMKFGHHG NHPV+D+
Sbjct: 240 GDPEPCDYAIEAIQQVLETNIPVFGICLGHQLLALASGAKTAKMKFGHHGANHPVQDMRT 299
Query: 303 NVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHD 362
VMIT+QNHGFAVD TLP+NL TH SLFDG+LQGI RTDK AFSFQGHPEASPGPHD
Sbjct: 300 KKVMITSQNHGFAVDADTLPSNLEATHVSLFDGSLQGIQRTDKAAFSFQGHPEASPGPHD 359
Query: 363 AAPLFDHFIELIEQYR 378
AP+FD F+E ++Q++
Sbjct: 360 VAPMFDQFVENMKQFQ 375
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 502
Number of extensions: 16
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 378
Length adjustment: 30
Effective length of query: 352
Effective length of database: 348
Effective search space: 122496
Effective search space used: 122496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)
Align candidate WP_029910153.1 P166_RS0106645 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.27631.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27631.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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