Alignments for a candidate for proC in Thiomicrospira pelophila DSM 1534

Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate WP_029933745.1 N746_RS0102285 pyrroline-5-carboxylate reductase

Query= SwissProt::P22008
         (273 letters)



>NCBI__GCF_000711195.1:WP_029933745.1
          Length = 274

 Score =  271 bits (693), Expect = 1e-77
 Identities = 138/270 (51%), Positives = 197/270 (72%), Gaps = 1/270 (0%)

Query: 5   RIAFIGAGNMAASLIGGLRAQGVPAAQIRASDPGAEQRAKIAGEFAIDVVESNAEAVADA 64
           +IAFIGAGNM+ SLIGGL A G   ++I A+DP A+    ++ +F+I+  + N + +  A
Sbjct: 4   KIAFIGAGNMSRSLIGGLIASGYDKSKILAADPSADVCQALSQDFSIECFQDNHQVIKKA 63

Query: 65  DVVVLSVKPQAMKAVCQALAPAL-KPEQLIVSIAAGIPCASLEAWLGQPRPVVRCMPNTP 123
           +++VL+VKPQ +K +CQ L   + K + LI+S+AAG+    ++ WLG    VVR MPNTP
Sbjct: 64  EILVLAVKPQQLKVLCQQLLTDIQKKKPLIISVAAGVRSRDIDHWLGGNLAVVRAMPNTP 123

Query: 124 ALLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGPAYFFLL 183
           AL++ GA+GL+AN +VS  Q  QA ++L A G+ LW+ +E ++DAVTA+SGSGPAY+FL 
Sbjct: 124 ALIQTGATGLFANDKVSELQHNQAEEILRAAGLTLWVKEEEKLDAVTALSGSGPAYYFLF 183

Query: 184 MQAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTTEAAIKS 243
           M+AM  AG+KLGL ++TA  LTLQTA GAA+MAL S  +   LR +VTSPNGTTE AI+S
Sbjct: 184 MEAMEAAGQKLGLDKKTAHLLTLQTAFGAAKMALESSDDCTALRHKVTSPNGTTEKAIQS 243

Query: 244 FQANGFEALVEQALNAASQRSAELAEQLGQ 273
           FQA+  E ++E+A+ AA  R+ +LA++LG+
Sbjct: 244 FQADQLEQIIERAMQAAKARAQQLADELGE 273


Lambda     K      H
   0.315    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 208
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 274
Length adjustment: 25
Effective length of query: 248
Effective length of database: 249
Effective search space:    61752
Effective search space used:    61752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate WP_029933745.1 N746_RS0102285 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.3450.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3450.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.