Alignments for a candidate for argI in Thiomicrospira pelophila DSM 1534

Align Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 (characterized)
to candidate WP_029933848.1 N746_RS0102825 ornithine carbamoyltransferase

Query= SwissProt::P11724
         (305 letters)



>NCBI__GCF_000711195.1:WP_029933848.1
          Length = 302

 Score =  402 bits (1033), Expect = e-117
 Identities = 189/299 (63%), Positives = 238/299 (79%)

Query: 1   MSVRHFLSFMDYSPEELIGLIRRGSELKDLRNRGVLYEPLKSRVLGMVFEKASTRTRLSF 60
           M+  HFL+    +P++L  +++RG ELK +++ G +YEPLK++ L M+FEKASTRTR+SF
Sbjct: 1   MTNNHFLTLKSLTPQQLQHILQRGIELKKMQHAGEIYEPLKNQTLAMIFEKASTRTRISF 60

Query: 61  EAGMIQLGGQAIFLSPRDTQLGRGEPIGDSARVMSRMLDGVMIRTFAHATLTEFAAHSKV 120
           E GM QLGG A+FLSPRDTQLGRGEPI DSARV+S M+DG+M+RTF H+ +   A  S V
Sbjct: 61  EVGMTQLGGHALFLSPRDTQLGRGEPIEDSARVISSMVDGIMVRTFEHSIVETMAEFSSV 120

Query: 121 PVINGLSDDLHPCQLLADMQTFHEHRGSIQGKTVAWIGDGNNMCNSYIEAALKFDFQLRV 180
           PVIN L+DD HPCQLLADMQT++EHRGSIQGKTV WIGDGNNMC SYI AA  +DF+LRV
Sbjct: 121 PVINALTDDFHPCQLLADMQTYYEHRGSIQGKTVVWIGDGNNMCQSYINAAQIYDFKLRV 180

Query: 181 ACPEGYEPKAEFVALAGDRLRVVRDPREAVAGAHLVSTDVWASMGQEDEAAARIALFRPY 240
           ACP+G+EP+A+ + +A DR+ +VRDP EA  GA L+ TDVWASMGQEDE   RI     Y
Sbjct: 181 ACPKGFEPRADLIEMAKDRVEIVRDPMEAAQGADLLVTDVWASMGQEDEQRLRIQALSKY 240

Query: 241 QVNAALLDGAADDVLFMHCLPAHRGEEISEELLDDPRSVAWDQAENRLHAQKALLELLI 299
           +V+ A++D A  + LFMHCLPAHRGEE++ E++D  +SV WD+AENRLHAQKALLE L+
Sbjct: 241 RVSRAIMDQADSNALFMHCLPAHRGEEVTAEVIDGHQSVVWDEAENRLHAQKALLEFLM 299


Lambda     K      H
   0.322    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 319
Number of extensions: 7
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 302
Length adjustment: 27
Effective length of query: 278
Effective length of database: 275
Effective search space:    76450
Effective search space used:    76450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)

Align candidate WP_029933848.1 N746_RS0102825 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.25988.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25988.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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