Alignments for a candidate for asd in Thiomicrospira pelophila DSM 1534

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_029933938.1 N746_RS0103290 aspartate-semialdehyde dehydrogenase

Query= SwissProt::P23247
         (337 letters)



>NCBI__GCF_000711195.1:WP_029933938.1
          Length = 339

 Score =  426 bits (1094), Expect = e-124
 Identities = 214/337 (63%), Positives = 262/337 (77%), Gaps = 3/337 (0%)

Query: 3   QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEF 62
           ++F+VA+ GATGAVGET+L+VL+ER FP+  L+ LAS RS GK   F G+ V V ++E+F
Sbjct: 2   RKFDVAVVGATGAVGETILKVLEERNFPIGNLYPLASSRSAGKKIEFKGEWVEVLDLEKF 61

Query: 63  DWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR 122
           D+S+  I LFS G  +SA +AP AAEAG VV+DNTS FRYD +IPLVVPEVNP+AIA ++
Sbjct: 62  DFSKAQIGLFSPGASVSAIYAPKAAEAGCVVVDNTSQFRYDDEIPLVVPEVNPDAIAGYK 121

Query: 123 NRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNG 182
            R IIANPNCSTIQM+VALKPIYDAVGIERINV TYQ+VSG GK  I+ELA QTA +LN 
Sbjct: 122 KRGIIANPNCSTIQMMVALKPIYDAVGIERINVATYQAVSGTGKEAIEELAKQTANILNL 181

Query: 183 YPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVF 242
            P E   + +QIAFNCIPQID FM+NGYTKEEMKMVWET+KIF D SI VNPT VRVPVF
Sbjct: 182 KPVEIEVYPKQIAFNCIPQIDVFMENGYTKEEMKMVWETKKIFGDESIKVNPTAVRVPVF 241

Query: 243 YGHAEAVHVETRAPIDAEQVMDMLEQTDG---IELFRGADFPTQVRDAGGKDHVLVGRVR 299
           +GH+EAVH+ET+  I A+Q  ++L+++ G   I+      +PT V DA   + V VGR+R
Sbjct: 242 FGHSEAVHIETKQKITAQQARELLQKSPGLVVIDEHADGGYPTAVSDAADTNPVYVGRIR 301

Query: 300 NDISHHSGINLWVVADNVRKGAATNAVQIAELLVRDY 336
            DI+   G+NLWVVADNVRKGAATN VQIAE+L+  Y
Sbjct: 302 EDITVERGLNLWVVADNVRKGAATNTVQIAEVLIEKY 338


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 369
Number of extensions: 13
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 339
Length adjustment: 28
Effective length of query: 309
Effective length of database: 311
Effective search space:    96099
Effective search space used:    96099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_029933938.1 N746_RS0103290 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.24369.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24369.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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