Alignments for a candidate for cmutase in Hydrogenovibrio halophilus DSM 15072

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate WP_033423190.1 A377_RS0110545 prephenate dehydratase

Query= SwissProt::P27603
         (365 letters)



>NCBI__GCF_000384235.1:WP_033423190.1
          Length = 370

 Score =  299 bits (766), Expect = 7e-86
 Identities = 162/364 (44%), Positives = 229/364 (62%), Gaps = 3/364 (0%)

Query: 2   SEADQLKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWVL 61
           +E  +L A+R  ID++D  I  LI  RA CAQ+VA +KT       EAVFYRPEREA VL
Sbjct: 9   TEQIELNAIREEIDAIDADIQTLIGRRAECAQKVADIKTRGGQV--EAVFYRPEREAQVL 66

Query: 62  KHIMELNKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVIS 121
           + +   N   + NE+MARLFREIMS CLALEQP++VAYLGPEG++S A  LK FG SV  
Sbjct: 67  RAVKARNHSLIPNEDMARLFREIMSVCLALEQPVKVAYLGPEGSYSHACVLKQFGTSVHP 126

Query: 122 KPMAAIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLL 181
             + +ID VF  V    V +GVVPVENS+EG V  T  + ++  + + GEV+L IHH LL
Sbjct: 127 YAVPSIDAVFAAVEKKHVQYGVVPVENSSEGVVKQTQKALMDTALKVTGEVDLAIHHCLL 186

Query: 182 VGETTKTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIAG 241
             +      + +I +H Q+L QC +WL  + P +    V SNA AA+  +++ N  AIA 
Sbjct: 187 -AQNPDPHALKKIVAHPQALGQCEQWLSQNLPGLVTEEVDSNAVAAQMAEADPNVGAIAS 245

Query: 242 DMAAQLYGLSKLAEKIEDRPVNSTRFLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELLM 301
           + AA+LYGL  L  +IED+  N+T+F ++G +   P+G DKT++I+S+ N+ G+L  +L 
Sbjct: 246 EEAARLYGLKILETRIEDQKNNTTKFWVLGQEAAGPSGQDKTAMILSVPNQAGSLIRVLD 305

Query: 302 PFHSNGIDLTRIETRPSRSGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSYP 361
            F    I +TRI + PS   +W Y+F+ID +GH + P +   L ++  +    K+LGSYP
Sbjct: 306 SFARRRISMTRIISVPSTETRWDYIFYIDILGHREQPEVAEALTEVQAQCSYFKLLGSYP 365

Query: 362 KAVL 365
            + L
Sbjct: 366 VSPL 369


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 354
Number of extensions: 16
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 370
Length adjustment: 30
Effective length of query: 335
Effective length of database: 340
Effective search space:   113900
Effective search space used:   113900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_033423190.1 A377_RS0110545 (prephenate dehydratase)
to HMM TIGR01807 (pheA: chorismate mutase (EC 5.4.99.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.32226.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32226.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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