Alignments for a candidate for argE in Beijerinckia mobilis UQM 1969

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate WP_034994620.1 DL88_RS08495 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>NCBI__GCF_000745425.1:WP_034994620.1
          Length = 392

 Score =  232 bits (592), Expect = 1e-65
 Identities = 142/382 (37%), Positives = 201/382 (52%), Gaps = 24/382 (6%)

Query: 5   EILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEARGY 64
           ++L  L+ F +     N  +V+ +  YL    +    +P  EGD++ +F TIGPK+  G 
Sbjct: 16  DLLECLISFDTESSKSNLALVAAVEDYLRGQDVDYVKVPNAEGDKAALFITIGPKKDGGV 75

Query: 65  IISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLRRP 124
           ++SGH DVVP A   WT DPF LR + DR++GRG  DMKGF A  LA +P+     L RP
Sbjct: 76  VLSGHTDVVPVAGQKWTGDPFVLRRDTDRVFGRGACDMKGFDALCLAMIPEFKQAHLTRP 135

Query: 125 LHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVRGR 184
           +H+ LSYDEE  C G    IAR  +   +P   ++GEPT M+   AHK  A    TVRG 
Sbjct: 136 IHILLSYDEEVACTGSLDTIARFGQDLPRPAAVLVGEPTMMQVADAHKSVATYLTTVRGH 195

Query: 185 SGHSSRPDQGLNAIHGVAGVLTQAVAEADRLV--GGPFEHVFEPPYSSLQIGTVKGGQAV 242
             HSS+P  G +A+     ++T+    AD L+  G P    F+PP S++ +G ++GG A 
Sbjct: 196 EAHSSKPYLGASAVEAACDLVTELYRFADMLLTEGDPSGR-FDPPASTIHVGMIQGGTAR 254

Query: 243 NIIPDSCEVEFEARAISGVDPAE-------------LLAPVRKTA-EALTTLGFEVEWQE 288
           NI+   C   +E R +   DP +             +L  +R+ A EA      EVE   
Sbjct: 255 NIMAKECWFLWEFRGLPS-DPQDRALRHLEDYAERVVLPKMRRYAPEASIETLVEVE--- 310

Query: 289 LSAYPALSLEPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHK 348
               P L+ E  +   +L  +L        V + TEAG FQRA +  I+CGPG I +AH+
Sbjct: 311 ---VPGLAPETGSQAESLALKLARSNRTITVPFATEAGQFQRAEVPTIVCGPGSIDQAHQ 367

Query: 349 PDEYILIDELMACRAMVEALGA 370
           PDEYI + +L    A +  L A
Sbjct: 368 PDEYIALSQLEEGIAFMRRLAA 389


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 348
Number of extensions: 11
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 392
Length adjustment: 30
Effective length of query: 344
Effective length of database: 362
Effective search space:   124528
Effective search space used:   124528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_034994620.1 DL88_RS08495 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.23343.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23343.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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