Alignments for a candidate for serA in Beijerinckia mobilis UQM 1969

Align phosphoglycerate dehydrogenase; EC 1.1.1.95 (characterized)
to candidate WP_034995216.1 DL88_RS09600 phosphoglycerate dehydrogenase

Query= CharProtDB::CH_004924
         (525 letters)



>NCBI__GCF_000745425.1:WP_034995216.1
          Length = 529

 Score =  424 bits (1090), Expect = e-123
 Identities = 223/525 (42%), Positives = 332/525 (63%), Gaps = 6/525 (1%)

Query: 3   RVLVSDKMSNDGLQPL----IESDFIEIVQKNVADAEDELHTFDALLVRSATKVTEDLFN 58
           RVL+SD +S   +       +E DF   + K+     + +  FD L +RSATKVT+ +  
Sbjct: 4   RVLISDALSEAAVAIFKERGVEVDFQPDLGKDKDKLAEIIGQFDGLAIRSATKVTDKILE 63

Query: 59  KMTSLKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQAN 118
           K T+LK+VGRAG+GVDN+DI  AT  GVIV+N P GN+I+TAEH  A++ +L R IP A+
Sbjct: 64  KATNLKVVGRAGIGVDNVDIPAATAKGVIVMNTPFGNSITTAEHAIALMFALARQIPAAD 123

Query: 119 ISVKSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRRGAFGMTVHVFDPFLTEERAKK 178
            S ++ +W +  ++G E+  K LGI+G G IGS +A+R     M V  FDPFLT ERA  
Sbjct: 124 ASTQAGKWEKNKFMGVEITAKVLGIIGCGNIGSIVAERGLGLKMRVIAFDPFLTPERALD 183

Query: 179 IGVNSRTFEEVLESADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDEAAL 238
           +GV     +++L  AD IT+HTPLT +TK +L+ E +AKTKKGVR+INCARGG++DE AL
Sbjct: 184 LGVEKVELDDLLARADFITLHTPLTPQTKNILSAENLAKTKKGVRIINCARGGLVDEEAL 243

Query: 239 LEALENGHVAGAALDVFEVEPPVDNKLVDHPLVIATPHLGASTKEAQLNVAAQVSEEVLQ 298
            +AL++GHVAGAA DVF  EP  +N L  HP V+ TPHLGAST EAQ NVA QV+E++  
Sbjct: 244 RKALDSGHVAGAAFDVFVTEPAKENPLFGHPNVVCTPHLGASTTEAQENVALQVAEQMSD 303

Query: 299 FAKGLPVMSAINLPAMTKDEFAKIKPYHQIAGKIGSLVSQCMKEPVQDVAIQYEGTIAKL 358
           +     + +A+N P++T +E  K+KP+  +A ++GS   Q +   ++ V I YEG + +L
Sbjct: 304 YLIRGAISNAVNFPSITAEEAPKLKPFIALADRLGSFAGQVVDTAIKKVTITYEGEVGQL 363

Query: 359 ETSFITKALLSGFLKPRVDSTVNEVNAGGVAKERGISFSE-KISSSESGYDNCISVKVTG 417
           +   +T + ++G L+P + S VN V+A  VAKERGI   E   +++++ Y++ I++ V  
Sbjct: 364 KIKALTASAIAGLLRPLL-SDVNVVSAPAVAKERGIIIDEVSRAAADADYESLITLTVET 422

Query: 418 DRSTFTVTATYIPHFGERIVEINGFNIDFYPTGHLVYIQHQDTTGVIGRVGRILGDNDIN 477
           +  + ++  T       RI+ IN   ID      ++YI ++D  G IGR   +LG+  +N
Sbjct: 423 EAGSHSIAGTVFHDGKPRIIAINDIKIDAAVAPAMIYISNEDKPGFIGRFASLLGNAGVN 482

Query: 478 IATMQVGRKEKGGEAIMMLSFDRHLEDKIVKELTNVPDIVSVKLI 522
           IAT  +GR  +GG AI ++  D  + D ++ E+  +P +   KL+
Sbjct: 483 IATFALGRDREGGSAIALVEIDGSVPDNVLSEVKALPGVKKAKLL 527


Lambda     K      H
   0.317    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 620
Number of extensions: 28
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 529
Length adjustment: 35
Effective length of query: 490
Effective length of database: 494
Effective search space:   242060
Effective search space used:   242060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_034995216.1 DL88_RS09600 (phosphoglycerate dehydrogenase)
to HMM TIGR01327 (serA: phosphoglycerate dehydrogenase (EC 1.1.1.95))

Software error:

../bin/blast/fastacmd -i /tmp/list.20505.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20505.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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