Alignments for a candidate for leuC in Beijerinckia mobilis UQM 1969

Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized)
to candidate WP_034996465.1 DL88_RS12350 3-isopropylmalate dehydratase large subunit

Query= CharProtDB::CH_024771
         (466 letters)



>NCBI__GCF_000745425.1:WP_034996465.1
          Length = 468

 Score =  593 bits (1528), Expect = e-174
 Identities = 292/462 (63%), Positives = 351/462 (75%)

Query: 3   KTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFATMD 62
           +TLY+K++D HV+    + T LLYIDRHLVHEVTSPQAF+GLR  GR +R P KT A +D
Sbjct: 5   RTLYDKIWDDHVIETQADGTSLLYIDRHLVHEVTSPQAFEGLRMAGRKIRAPQKTLAVVD 64

Query: 63  HNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTLPGM 122
           HNV T  +        +R+Q+ +L  N  EFG+E YD     QG+VH++GPEQG TLPG 
Sbjct: 65  HNVPTTDRSQGIEDPESRLQVAQLAANAAEFGIEYYDALDHRQGVVHIIGPEQGFTLPGT 124

Query: 123 TIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITAKD 182
           TIVCGDSHT+THGAFGALA GIGTSEVEHVLATQTL Q +AK M+I V G     ++AKD
Sbjct: 125 TIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQAKAKNMRIVVDGVLPDHVSAKD 184

Query: 183 IVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTFNY 242
           ++LAIIG+ G+AGGTGHV+E+ GEAIR LSMEGRMT+CNM IE GA+AG++APDE T+ Y
Sbjct: 185 LILAIIGEIGTAGGTGHVIEYAGEAIRALSMEGRMTVCNMTIEGGARAGMIAPDEKTYAY 244

Query: 243 VKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISVND 302
           +K R  APKG  +D A+AYW+TL +DEGA FD  + L A  + P VTWGT+P  V+++  
Sbjct: 245 LKDRPKAPKGAAWDAALAYWQTLSSDEGAVFDREIRLDAANLPPTVTWGTSPEDVVAITG 304

Query: 303 NIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAAEIA 362
            +P P       ++AS  +AL YMGLK G  LT +AID+VFIGSCTN RIEDLRAAA+I 
Sbjct: 305 LVPSPEDATSEAKKASIARALDYMGLKGGEKLTSIAIDRVFIGSCTNGRIEDLRAAAQIV 364

Query: 363 KGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNPGE 422
           +G+ +A  V  LVVPGSG VK QAEAEGLD IF  AGFEWR PGCSMCLAMN D+L+PGE
Sbjct: 365 QGKHIAASVNGLVVPGSGLVKEQAEAEGLDVIFKAAGFEWREPGCSMCLAMNPDKLSPGE 424

Query: 423 RCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRN 464
           RCASTSNRNFEGRQG  GRTHLVSPAMAAAA + GHF DIR+
Sbjct: 425 RCASTSNRNFEGRQGFKGRTHLVSPAMAAAAGIAGHFVDIRD 466


Lambda     K      H
   0.317    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 745
Number of extensions: 25
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 468
Length adjustment: 33
Effective length of query: 433
Effective length of database: 435
Effective search space:   188355
Effective search space used:   188355
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_034996465.1 DL88_RS12350 (3-isopropylmalate dehydratase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.8310.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8310.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.