Alignments for a candidate for asd in Beijerinckia mobilis UQM 1969

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_034997530.1 DL88_RS14650 aspartate-semialdehyde dehydrogenase

Query= SwissProt::P23247
         (337 letters)



>NCBI__GCF_000745425.1:WP_034997530.1
          Length = 344

 Score =  320 bits (820), Expect = 3e-92
 Identities = 167/332 (50%), Positives = 224/332 (67%), Gaps = 5/332 (1%)

Query: 5   FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDW 64
           F VA+ GATG VG  ML++L ER+FP DE+  LAS RS G    F  KT++ + +E +D+
Sbjct: 3   FKVAVVGATGNVGREMLDILAERQFPADEVVALASSRSMGTEVSFGDKTLKCKTLENYDF 62

Query: 65  SQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNR 124
           +   I L SAGG +S +W+P     G VVIDN+S +R D D+PL+VPEVN +AI  F  +
Sbjct: 63  TGTDICLMSAGGAVSKEWSPKIGAQGCVVIDNSSTWRMDPDVPLIVPEVNADAIVGFSRK 122

Query: 125 NIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYP 184
           NIIANPNCST Q++VALKP++D   I R+ V+TYQSVSGAGK  +DEL  QT  +    P
Sbjct: 123 NIIANPNCSTAQLVVALKPLHDKAKILRVVVSTYQSVSGAGKDAMDELFAQTRAIFVSDP 182

Query: 185 AETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYG 244
            E+  F ++IAFN IP+ID FM++GYTKEE KMV ET+KI  DP I +  TCVRVPVF  
Sbjct: 183 VESKKFPKRIAFNVIPEIDVFMEDGYTKEEWKMVVETKKIL-DPKIKLTATCVRVPVFIS 241

Query: 245 HAEAVHVETRAPIDAEQVMDMLEQTDG---IELFRGADFPTQVRDAGGKDHVLVGRVRND 301
           H+EAV+VE   PI A++  D+L +  G   ++      + T   +A G+D   + R+R D
Sbjct: 242 HSEAVNVEFEHPISADEARDILREAPGCLVVDKREKGGYMTP-HEAAGEDATYISRIRED 300

Query: 302 ISHHSGINLWVVADNVRKGAATNAVQIAELLV 333
            +  +G+  W V+DN+RKGAA NAVQIAE+L+
Sbjct: 301 PTVENGLVFWCVSDNLRKGAALNAVQIAEVLI 332


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 325
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 344
Length adjustment: 28
Effective length of query: 309
Effective length of database: 316
Effective search space:    97644
Effective search space used:    97644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_034997530.1 DL88_RS14650 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.30032.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30032.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.