Alignments for a candidate for gatA in Desulfobacter vibrioformis DSM 8776

Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate WP_035236864.1 Q366_RS04885 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA

Query= SwissProt::O06491
         (485 letters)



>NCBI__GCF_000745975.1:WP_035236864.1
          Length = 490

 Score =  518 bits (1333), Expect = e-151
 Identities = 265/492 (53%), Positives = 351/492 (71%), Gaps = 9/492 (1%)

Query: 1   MSLFDHKITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDE 60
           M+L    I + + L+ +KEI   +L      RI+  D+ + AF+ +D E A   A++ D 
Sbjct: 1   MNLHTLTIAQAQDLLAQKEISSVELTRAFLDRIEQYDNNIAAFITVDPELALEQAEQADR 60

Query: 61  AVDGRSEHGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIG 120
            +  + E+    G+P+ +KD + TKG++TTC+SKILENF P YDATVV++ +  +AV IG
Sbjct: 61  TI-AKGENQPFTGIPVALKDVLCTKGVKTTCASKILENFVPRYDATVVEKFKAQDAVLIG 119

Query: 121 KLNMDEFAMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIR 180
           K NMDEFAMGSSTENSA+ +T+NPWN D VPGGSSGGSAAAVAA     ++G+DTGGSIR
Sbjct: 120 KTNMDEFAMGSSTENSAFFVTRNPWNTDHVPGGSSGGSAAAVAARFCAGAVGTDTGGSIR 179

Query: 181 QPASFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTS 240
           QPAS CGVVGLKPTYGRVSR+G+VA+ASSLDQ+GPITR V D A +L  + G D  DSTS
Sbjct: 180 QPASHCGVVGLKPTYGRVSRFGVVAYASSLDQVGPITRDVTDTAMMLNLMGGHDPKDSTS 239

Query: 241 ANVDVPDFLSSLT----GDIKGLKIAVPKE--YLGEGVGKEARESVLAALKVLEGLGATW 294
           +   +PDF   +       + G+   +PKE  YLG G+  E +     A K LEGLG T 
Sbjct: 240 SPEQMPDFTKGIAMFKDKGLAGMTAGIPKEFSYLG-GIDPEVKAMFENAQKTLEGLGVTI 298

Query: 295 EEVSLPHSKYALATYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNE 354
           +E+SLPH+ Y +A YY+++  EASANLARFDG+RYGYR   +D+LI++YK+T+++GFG E
Sbjct: 299 KEISLPHTNYVVAAYYIIAPCEASANLARFDGVRYGYRDMGSDDLIEMYKKTKSKGFGLE 358

Query: 355 VKRRIMLGTFALSSGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGEN 414
           V+RRI++GT++LSSGYYDAYY +A +VR LI  DF+  FE  D+I+ P  PTPAFKIGEN
Sbjct: 359 VQRRIIIGTYSLSSGYYDAYYGRASQVRALIMDDFKRAFEACDIILSPVAPTPAFKIGEN 418

Query: 415 TKDPLTMYANDILTIPVNLAGVPGISVPCGLAD-GLPLGLQIIGKHFDESTVYRVAHAFE 473
            +DPLTMY +DI T+  N+AG+PGISVP G++  GLP+GLQ++ +HFDE ++ R    FE
Sbjct: 419 VEDPLTMYLSDIFTLSCNMAGIPGISVPAGISSTGLPMGLQMMARHFDEMSLIRAGFGFE 478

Query: 474 QATDHHKAKPEL 485
           QA       PEL
Sbjct: 479 QAVGKPIEFPEL 490


Lambda     K      H
   0.315    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 630
Number of extensions: 24
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 490
Length adjustment: 34
Effective length of query: 451
Effective length of database: 456
Effective search space:   205656
Effective search space used:   205656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_035236864.1 Q366_RS04885 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.2362.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2362.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.