Alignments for a candidate for ilvE in Desulfobacter vibrioformis DSM 8776

Align Branched-chain-amino-acid aminotransferase 2; BCAT 2; Vegetative protein 85; VEG85; EC 2.6.1.42 (characterized)
to candidate WP_035238892.1 Q366_RS10700 branched-chain amino acid aminotransferase

Query= SwissProt::P39576
         (363 letters)



>NCBI__GCF_000745975.1:WP_035238892.1
          Length = 353

 Score =  384 bits (985), Expect = e-111
 Identities = 186/340 (54%), Positives = 243/340 (71%), Gaps = 1/340 (0%)

Query: 17  KPDPNQLSFGRVFTDHMFVMDYAADKGWYDPRIIPYQPLSMDPAAMVYHYGQTVFEGLKA 76
           KPD + L FG +FTDHMF +DY  +KGW++ RI P+Q     PA MV HYGQ +FEGLKA
Sbjct: 14  KPDGSTLGFGNIFTDHMFNLDYNPEKGWHNARIEPFQKFEFSPATMVLHYGQAIFEGLKA 73

Query: 77  YVSEDDHVLLFRPEKNMERLNQSNDRLCIPQIDEEQVLEGLKQLVAIDKDWIPNAEGTSL 136
           Y ++   +LLFR + N +RLN S   LCIP++D + +++ L +L+ ++KDW+P A GTSL
Sbjct: 74  YKNDKKDILLFRVKDNFKRLNNSAKGLCIPELDSDFLIKALHKLLKLEKDWVPEAPGTSL 133

Query: 137 YIRPFIIATEPFLGVAASHTYKLLIILSPVGSYYKEGIKPVKIAVESEFVRAVKGGTGNA 196
           YIRP IIAT+P + +  S TY+  +ILSPVG+YY EG KPV I V  ++ RA+ GG G  
Sbjct: 134 YIRPAIIATDPSIDLRPSETYRYFVILSPVGAYY-EGFKPVNIWVSKDYTRAIPGGVGEF 192

Query: 197 KTAGNYASSLKAQQVAEEKGFSQVLWLDGIEKKYIEEVGSMNIFFKINGEIVTPMLNGSI 256
           KTAGNYA+SL A   A E G++QVLWLD +EKKYIEEVGSMNIFF I  EIVTP L GSI
Sbjct: 193 KTAGNYAASLFAATEAAENGYNQVLWLDAVEKKYIEEVGSMNIFFVIGDEIVTPKLTGSI 252

Query: 257 LEGITRNSVIALLKHWGLQVSERKIAIDEVIQAHKDGILEEAFGTGTAAVISPVGELIWQ 316
           L GITR+SVI L  +WG ++SER+I+IDE+++AH  G L+E FG+GT   ISPVG++   
Sbjct: 253 LPGITRSSVIDLSNNWGFKISERRISIDEILEAHDSGDLKEVFGSGTGVGISPVGKIGLD 312

Query: 317 DETLSINNGETGEIAKKLYDTITGIQKGAVADEFGWTTEV 356
           D  L+IN  + GE+A K  + +TGI+ G   D+F W T V
Sbjct: 313 DTELTINGNKPGELAVKFDEELTGIKLGNREDKFNWVTPV 352


Lambda     K      H
   0.316    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 447
Number of extensions: 17
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 353
Length adjustment: 29
Effective length of query: 334
Effective length of database: 324
Effective search space:   108216
Effective search space used:   108216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_035238892.1 Q366_RS10700 (branched-chain amino acid aminotransferase)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.15553.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15553.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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