Alignments for a candidate for ilvE in Desulfobacter vibrioformis DSM 8776

Align Branched-chain-amino-acid aminotransferase 2; BCAT 2; Vegetative protein 85; VEG85; EC 2.6.1.42 (characterized)
to candidate WP_035238991.1 Q366_RS11460 branched-chain amino acid aminotransferase

Query= SwissProt::P39576
         (363 letters)



>NCBI__GCF_000745975.1:WP_035238991.1
          Length = 354

 Score =  421 bits (1083), Expect = e-122
 Identities = 207/349 (59%), Positives = 262/349 (75%), Gaps = 2/349 (0%)

Query: 6   IRVELTSTKKP--KPDPNQLSFGRVFTDHMFVMDYAADKGWYDPRIIPYQPLSMDPAAMV 63
           + V++T   +P  +P    L FG VFTDHMFVMDY  DKGW++ RI PY   SM PA+MV
Sbjct: 1   MEVKVTRVSEPGTRPKDEDLGFGTVFTDHMFVMDYEKDKGWFNARIEPYGDFSMSPASMV 60

Query: 64  YHYGQTVFEGLKAYVSEDDHVLLFRPEKNMERLNQSNDRLCIPQIDEEQVLEGLKQLVAI 123
            HYGQ VFEGLKAY ++D  + L+R   N  R+N+S+  LCIP+ID + V++ LK+L+ +
Sbjct: 61  LHYGQAVFEGLKAYKTKDGKIQLYRARDNFARMNRSSQGLCIPEIDIDFVMDALKKLIKL 120

Query: 124 DKDWIPNAEGTSLYIRPFIIATEPFLGVAASHTYKLLIILSPVGSYYKEGIKPVKIAVES 183
           ++ WIP   GTSLYIRP ++AT+PFLGV AS+TYK  IILSPVGSYY +G++PVKI V  
Sbjct: 121 EQAWIPETMGTSLYIRPTLVATDPFLGVRASYTYKFFIILSPVGSYYAQGLQPVKIWVCE 180

Query: 184 EFVRAVKGGTGNAKTAGNYASSLKAQQVAEEKGFSQVLWLDGIEKKYIEEVGSMNIFFKI 243
           + VRAV+GG G  KT GNYA+SL A + A+++G++QVLWLDGIE KYIEEVG+MNIFF I
Sbjct: 181 DHVRAVRGGVGEFKTPGNYAASLLAGEKAKKEGYNQVLWLDGIELKYIEEVGAMNIFFLI 240

Query: 244 NGEIVTPMLNGSILEGITRNSVIALLKHWGLQVSERKIAIDEVIQAHKDGILEEAFGTGT 303
           N E+VTPMLNGSIL GITR SVI L K WG++VSERKI+IDEVI A  +G L+E FG+GT
Sbjct: 241 NDELVTPMLNGSILPGITRFSVIELAKKWGMKVSERKISIDEVIAAADNGTLQEMFGSGT 300

Query: 304 AAVISPVGELIWQDETLSINNGETGEIAKKLYDTITGIQKGAVADEFGW 352
           AAV+SPVGEL ++D  + I NGE GE+  K Y+ +T IQ G   D  GW
Sbjct: 301 AAVVSPVGELRYKDRVIHIGNGEPGEVCMKFYNAVTAIQYGNAEDTEGW 349


Lambda     K      H
   0.316    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 451
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 354
Length adjustment: 29
Effective length of query: 334
Effective length of database: 325
Effective search space:   108550
Effective search space used:   108550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_035238991.1 Q366_RS11460 (branched-chain amino acid aminotransferase)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.19042.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19042.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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