Alignments for a candidate for ilvD in Desulfobacter vibrioformis DSM 8776

Align dihydroxy-acid dehydratase subunit (EC 4.2.1.9) (characterized)
to candidate WP_035240749.1 Q366_RS15950 dihydroxy-acid dehydratase

Query= metacyc::MONOMER-11919
         (549 letters)



>NCBI__GCF_000745975.1:WP_035240749.1
          Length = 556

 Score =  598 bits (1542), Expect = e-175
 Identities = 302/549 (55%), Positives = 406/549 (73%), Gaps = 8/549 (1%)

Query: 8   RGIQRAPHRSLLARCGLTDDDFEKPFIGIANSYTDIVPGHIHLRELAEAVKEGVNAAGGV 67
           +G+ RAPHR LL   G TD + ++P IGIANS  +++PGH+HL  + +AVK G++ AGG 
Sbjct: 9   QGVARAPHRGLLKALGYTDIELDRPLIGIANSANELIPGHMHLDSIVKAVKAGISMAGGT 68

Query: 68  AFEFNTMAICDGIAMNHDGMKYSLASREIVADTVESMAMAHALDGLVLLPTCDKIVPGML 127
             EF+T+ +CDGIAMNH GM YSLASRE++AD++E +A AH  DG+V++P CDKIVPGML
Sbjct: 69  PMEFSTIGVCDGIAMNHIGMHYSLASRELIADSIEVVATAHPFDGIVMVPNCDKIVPGML 128

Query: 128 MAAARLDIPAIVVTGGPMLPGEF---KGRKVDLINVYEGVGTVSAGEMSEDELEELERCA 184
           MAAARL+IPAI V+GGPML G     + +K+DLI ++E VG V +G+M+E+EL E+E   
Sbjct: 129 MAAARLNIPAIFVSGGPMLAGRHPHDRSKKIDLITIFEAVGAVQSGKMTEEELLEMENGG 188

Query: 185 CPGPRSCAGLFTANTMACLTEALGMSLPGCATAHAVSSRKRQIARLSGKRIVEMVQENLK 244
           CP   SC+G+FTAN+M CLTEA+GM LPG  T  A  S + ++A+ +G +I+ +V+ N+ 
Sbjct: 189 CPTCGSCSGMFTANSMNCLTEAIGMGLPGNGTIPAPMSSRLRLAKAAGMQILSLVENNIT 248

Query: 245 PTMIMSQEAFENAVMVDLALGGSTNTTLHIPAIAAEIDGLNINLDLFDELSRVIPHIASI 304
           P  IM+++AF NA+ VD+ALG STNT LH+ A+AAE  G++I LDL +E+S+  PH+ S+
Sbjct: 249 PDKIMTRQAFMNALAVDMALGCSTNTVLHLKAVAAEA-GVDIPLDLINEVSKKTPHLCSL 307

Query: 305 SPAGEHMMLDLDRAGGIPAVLKTLEDH--INRECVTCTGRTVQENIENVKVGHRDVIRPL 362
           SP G+  + DLD AGGI AV+K L D+  I+   VT TG+T++EN+ENV+V + DVIRP+
Sbjct: 308 SPGGKDHIEDLDAAGGIQAVMKELSDNNMIDTGLVTATGKTIKENLENVRVKYPDVIRPV 367

Query: 363 DSPVHSEGGLAILRGNLAPRGSVVKQGAVAEDMMVHEGPAKVFNSEDECMEAIFGGRIDE 422
           + P H EGGLA+L GN+AP G VVKQ AV  +MM H+GPA+VF+ E++   AI   +I+ 
Sbjct: 368 NDPYHKEGGLAVLFGNIAPEGCVVKQSAVLPEMMTHQGPARVFDCEEDATTAIMARQINP 427

Query: 423 GDVIVIRYEGPKGGPGMREMLNPTSAIAGMGL-ERVALITDGRFSGGTRGPCVGHVSPEA 481
           GDVIVIRYEGP GGPGMREML PTSAIAGMGL +R ALITDGRFSGGT+G  +GHVSPEA
Sbjct: 428 GDVIVIRYEGPAGGPGMREMLTPTSAIAGMGLDDRCALITDGRFSGGTKGASIGHVSPEA 487

Query: 482 MEDGPLAAVNDGDIIRIDIPSRKLEVDLSPREIEERLQSAVKPRRSV-KGWLARYRKLAG 540
            + G +A V +GD IRIDIP++ +E+ +S  E   R     KP   + KG++ARY ++  
Sbjct: 488 AQGGLIALVLEGDQIRIDIPNKAIELLVSEDEQALRKADWKKPEPKIKKGYMARYARMVT 547

Query: 541 SADTGAVLR 549
           SA  GAV +
Sbjct: 548 SAGNGAVFK 556


Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1015
Number of extensions: 49
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 556
Length adjustment: 36
Effective length of query: 513
Effective length of database: 520
Effective search space:   266760
Effective search space used:   266760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_035240749.1 Q366_RS15950 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.17323.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17323.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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