Alignments for a candidate for carA in Phaeacidiphilus oryzae TH49

Align Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_037570771.1 BS73_RS08435 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P0A6F1
         (382 letters)



>NCBI__GCF_000744815.1:WP_037570771.1
          Length = 382

 Score =  305 bits (781), Expect = 1e-87
 Identities = 174/379 (45%), Positives = 213/379 (56%), Gaps = 23/379 (6%)

Query: 5   ALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVG 64
           A+LVLEDG  F G+A GA G   GE VFNT MTGYQE LTDPSY RQIV +T P IGN G
Sbjct: 9   AVLVLEDGRVFRGQAYGAVGETFGEAVFNTGMTGYQETLTDPSYRRQIVVMTAPQIGNTG 68

Query: 65  TNDADEES--SQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLL 122
            ND D ES   Q+   G V+RD   + SN+R+   L   L R  IV I+ IDTR LTR L
Sbjct: 69  WNDEDSESRSKQIWVAGYVVRDPARVPSNWRSRRSLDEELARQGIVGISGIDTRALTRHL 128

Query: 123 REKGAQNGCIIAGDN-PDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGL 181
           RE GA    I +GD  P     +E  R  P + G DLA EV T EAY+            
Sbjct: 129 RESGAMRAGIFSGDALPFEGDMVELVRNSPEMAGADLAGEVATGEAYT------------ 176

Query: 182 PEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNG 241
                  E  F V A D G K      + +RG  + ++PA  +AED+  + PDG+F SNG
Sbjct: 177 --VPAIGEKKFTVAAVDLGIKGMTPHRMAERGIEVHVLPATATAEDIYAVEPDGVFFSNG 234

Query: 242 PGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVE 301
           PGDPA  D  +  +++ L    P FGIC G+QL   A G  T K+K+GH G N PV+D  
Sbjct: 235 PGDPATADAQVEVLREVLRRKTPFFGICFGNQLFGRALGFGTFKLKYGHRGINQPVQDRT 294

Query: 302 KNVVMITAQNHGFAVD------EATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPE 355
              V +TA NHGFAVD        T    + V+H  L D  ++G+   D PAFS Q HPE
Sbjct: 295 TGKVEVTAHNHGFAVDAPLDEVSETEFGRVEVSHVCLNDDVVEGLQALDTPAFSVQYHPE 354

Query: 356 ASPGPHDAAPLFDHFIELI 374
           A+ GPHDAA LFD F +L+
Sbjct: 355 AAAGPHDAAYLFDRFTQLM 373


Lambda     K      H
   0.318    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 401
Number of extensions: 15
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 382
Length adjustment: 30
Effective length of query: 352
Effective length of database: 352
Effective search space:   123904
Effective search space used:   123904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_037570771.1 BS73_RS08435 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.24320.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24320.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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