Alignments for a candidate for argI in Phaeacidiphilus oryzae TH49

Align Ornithine carbamoyltransferase subunit F; OTCase-2; EC 2.1.3.3 (characterized)
to candidate WP_037571892.1 BS73_RS12735 ornithine carbamoyltransferase

Query= SwissProt::P06960
         (334 letters)



>NCBI__GCF_000744815.1:WP_037571892.1
          Length = 337

 Score =  420 bits (1079), Expect = e-122
 Identities = 215/338 (63%), Positives = 255/338 (75%), Gaps = 10/338 (2%)

Query: 3   DLYKKHFLKLLDFTPAQFTSLLTLAAQLKADKKNGKEVQKLTGKNIALIFEKDSTRTRCS 62
           +L  +HFLK LDFT  +F  LL LAAQLKA K  G E  +L G+NIAL+FEK STRTRCS
Sbjct: 4   NLRHRHFLKELDFTAQEFRFLLDLAAQLKAAKYAGTEQPRLRGRNIALVFEKGSTRTRCS 63

Query: 63  FEVAAFDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAQYAG 122
           FEVAA DQGA  TYL PSGS +G KESIKD+ARVLGRM+DGIQYRGHGQ VVE LA YAG
Sbjct: 64  FEVAAADQGAHTTYLDPSGSHLGAKESIKDSARVLGRMFDGIQYRGHGQAVVEELAAYAG 123

Query: 123 VPVWNGLTNEFHPTQLLADLMTMQEH---LPGKAFNEMTLVYAGDARNNMGNSMLEAAAL 179
           VPVWNGLT+E+HPTQ+LADL+T++EH     GK      L Y GDARNNMGNS+L   AL
Sbjct: 124 VPVWNGLTDEWHPTQMLADLLTIEEHNAATNGKPLARTALAYLGDARNNMGNSLLVTGAL 183

Query: 180 TGLDLRLLAPKACWPEESLVAECSALAEKHGGKITLTEDVAAGVKGADFIYTDVWVSMGE 239
            G+D+R++AP++ WP   + AE   LA + G +ITLT DV  GV GAD++YTDVWVSMGE
Sbjct: 184 MGMDIRIVAPESLWPTAEVRAEAERLAARSGARITLTADVEQGVAGADYVYTDVWVSMGE 243

Query: 240 AKEKWAERIALLRGYQVNAQMMALTDNPNVKFLHCLPAFHDDQTTLGKQMAKEFDLHGG- 298
            KE WAERI LL  YQ+N  ++  T NP V+FLHCLPAFHD    LG Q+A++     G 
Sbjct: 244 PKEVWAERIELLTPYQINMDVIRATGNPGVRFLHCLPAFHD----LGTQVARDLHATTGL 299

Query: 299 --MEVTDEVFESAASIVFDQAENRMHTIKAVMMATLGE 334
             +EVTDEVFES  S+VFD+AENRMHTIKAV++ATLG+
Sbjct: 300 TELEVTDEVFESEYSLVFDEAENRMHTIKAVLVATLGD 337


Lambda     K      H
   0.318    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 376
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 337
Length adjustment: 28
Effective length of query: 306
Effective length of database: 309
Effective search space:    94554
Effective search space used:    94554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_037571892.1 BS73_RS12735 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.22000.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22000.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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