Alignments for a candidate for ilvE in Phaeacidiphilus oryzae TH49

Align branched-chain-amino-acid transaminase (EC 2.6.1.42) (characterized)
to candidate WP_037572571.1 BS73_RS14690 branched-chain amino acid aminotransferase

Query= BRENDA::A0R066
         (368 letters)



>NCBI__GCF_000744815.1:WP_037572571.1
          Length = 359

 Score =  444 bits (1143), Expect = e-129
 Identities = 213/358 (59%), Positives = 269/358 (75%), Gaps = 4/358 (1%)

Query: 6   LEFTVSANTNPATDAVRESILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDP 65
           ++  +  + +P   A RE+ LA PGFG+Y+TD+MV+I +T   GWH+AQ++PYGP+++DP
Sbjct: 1   MQIELKPSAHPLPAAEREARLAAPGFGRYFTDNMVTIRWTEGRGWHDAQLVPYGPLEMDP 60

Query: 66  SAIVLHYGQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQ 125
           + + LHY QEIFEGLKAYR  DG +  FRPE NA R Q SAR LA+PELP E FIE+   
Sbjct: 61  ANMTLHYAQEIFEGLKAYRQPDGGVALFRPERNALRFQHSARTLAMPELPVETFIEACDA 120

Query: 126 LIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVS 185
           L+A D +WVPP GGE SLYLRPF+IA+E GLGV+P+NEY +L+IASPAG YF GG+KPVS
Sbjct: 121 LVAQDVEWVPPHGGEASLYLRPFMIASEVGLGVKPANEYLFLVIASPAGPYFPGGVKPVS 180

Query: 186 VWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMN 245
           +W+S + VRA PGG G AK GGNYAASLLAQA+AAE GC QV +LDA+ERR+VEE+GGMN
Sbjct: 181 IWISQDRVRAVPGGMGDAKTGGNYAASLLAQAEAAEQGCAQVAYLDAVERRWVEELGGMN 240

Query: 246 LFFVFGSGGSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGE 305
           L+FV+G     R+VTP L+GSLL G+TRDSLL LA D G+  EE +I VD+W++    G 
Sbjct: 241 LYFVYGD----RIVTPALTGSLLEGVTRDSLLTLARDLGYESEEARISVDQWREDTANGS 296

Query: 306 ITEVFACGTAAVITPVSHVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADTHGW 363
           +TEVFACGTAAVITPV  VK     +T   G+PG +T+ LR+ L  +Q G   D HGW
Sbjct: 297 LTEVFACGTAAVITPVGEVKTKGAAWTQGSGEPGPVTLRLREALLSLQTGNAEDPHGW 354


Lambda     K      H
   0.318    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 520
Number of extensions: 23
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 359
Length adjustment: 29
Effective length of query: 339
Effective length of database: 330
Effective search space:   111870
Effective search space used:   111870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_037572571.1 BS73_RS14690 (branched-chain amino acid aminotransferase)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.23799.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23799.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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