Alignments for a candidate for argG in Phaeacidiphilus oryzae TH49

Align argininosuccinate synthase (characterized)
to candidate WP_037574015.1 BS73_RS18735 argininosuccinate synthase

Query= CharProtDB::CH_024687
         (447 letters)



>NCBI__GCF_000744815.1:WP_037574015.1
          Length = 485

 Score =  597 bits (1539), Expect = e-175
 Identities = 289/434 (66%), Positives = 345/434 (79%), Gaps = 1/434 (0%)

Query: 1   MTTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRA 60
           M+ +L  LPVG+R+GIAFSGGLDTS A+ WMR+KGAVP  +TA+LGQ DE D  ++P RA
Sbjct: 1   MSKVLSSLPVGERVGIAFSGGLDTSVAVAWMREKGAVPCTFTADLGQYDEPDIASVPGRA 60

Query: 61  MEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKE 120
             YGAE +RL+DCR  LV EG+AA+ CGAFH  +GG  YFNTTPLGRAVTGTMLV AM E
Sbjct: 61  GAYGAELSRLVDCRAALVEEGLAALTCGAFHIRSGGRPYFNTTPLGRAVTGTMLVRAMLE 120

Query: 121 DGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACG 180
           D V IWGDGSTYKGNDIERFYRYGLL N  L+IYKPWLD +F+ ELGGR EMSE+++A  
Sbjct: 121 DDVQIWGDGSTYKGNDIERFYRYGLLANPALRIYKPWLDAEFVGELGGRTEMSEWLLARD 180

Query: 181 FDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVNPIMGVKFWDESVKIPAEEVTVR 240
             Y+ S EKAYSTD+N+ GATHEAK LE+L++ V++V PIMGV+FWD  V+I AE+VT+ 
Sbjct: 181 LPYRASTEKAYSTDANIWGATHEAKALEHLDNGVELVEPIMGVRFWDPEVEIAAEDVTIA 240

Query: 241 FEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALL 300
           F+QG PVA+NGK F   V+++LEAN IGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALL
Sbjct: 241 FQQGRPVAINGKEFPSAVDLVLEANAIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALL 300

Query: 301 HIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQGRWFDSQALMLRDSLQRWVASQITGEV 360
             AYERL+  IHNEDT+  YH  GR+LGRLLY+GRW D QALM+R+SLQRWV S +TGEV
Sbjct: 301 FAAYERLVNAIHNEDTVAAYHNEGRRLGRLLYEGRWLDPQALMIRESLQRWVGSAVTGEV 360

Query: 361 TLELRRGNDYSILNTVSENLTYKPERLTMEK-GDSVFSPDDRIGQLTMRNLDITDTREKL 419
           TL LRRG DYS++NT     +Y P++L+ME+  DS F P DRIGQLTMRNLDI D+R +L
Sbjct: 361 TLRLRRGEDYSVINTTGPAFSYHPDKLSMERTEDSAFGPTDRIGQLTMRNLDIADSRSRL 420

Query: 420 FGYAKTGLLSSSAA 433
             Y   GL+    +
Sbjct: 421 EQYTALGLIGGEGS 434


Lambda     K      H
   0.317    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 677
Number of extensions: 22
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 485
Length adjustment: 33
Effective length of query: 414
Effective length of database: 452
Effective search space:   187128
Effective search space used:   187128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_037574015.1 BS73_RS18735 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.2964.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2964.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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