Alignments for a candidate for thrC in Xenophilus azovorans DSM 13620

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_038201034.1 Q392_RS02880 threonine synthase

Query= BRENDA::Q2SWH9
         (483 letters)



>NCBI__GCF_000745855.1:WP_038201034.1
          Length = 471

 Score =  622 bits (1603), Expect = 0.0
 Identities = 332/482 (68%), Positives = 373/482 (77%), Gaps = 15/482 (3%)

Query: 1   MNYISTRGAGIGERHTFSDILLGGLAKDGGLYLPSEYPQVSADELARWRTLPYADLAFEI 60
           M YISTRG     R  F +ILL GLA DGGLY+P  YPQV A  L+ WR LPY +LAFEI
Sbjct: 1   MRYISTRGDATPRR--FCEILLEGLAPDGGLYMPQRYPQVDAATLSTWRGLPYHELAFEI 58

Query: 61  LSKFCDDIAAADLRAITRRTYTADVYRHARRGGNAADITPLTTLGTENGAPVSLLELSNG 120
           LS + DDI A DLRA+  +TYTA+V+        + DITPL  L  E+G  V L  LSNG
Sbjct: 59  LSLYIDDIPADDLRALCAKTYTAEVF-------GSEDITPLREL--EDG--VYLEGLSNG 107

Query: 121 PTLAFKDMAMQLLGNLFEYTLAKHGETLNILGATSGDTGSAAEYAMRGKEGVRVFMLSPH 180
           PTLAFKDMAMQLLGNLFEY L + GE LNILGATSGDTGSAAEYAMRGK+GVRVFM SP 
Sbjct: 108 PTLAFKDMAMQLLGNLFEYELGRRGEVLNILGATSGDTGSAAEYAMRGKQGVRVFMTSPD 167

Query: 181 KKMSAFQTAQMYSLQDPNIFNLAVNGVFDDCQDIVKAVSNDHAFKAQQKIGTVNSINWAR 240
            +MS FQ AQM+SLQD NI N+A+ GVFDDCQDIVKAVSND AFK Q +IGTVNSINWAR
Sbjct: 168 GRMSPFQQAQMFSLQDANIHNIAIAGVFDDCQDIVKAVSNDLAFKRQYRIGTVNSINWAR 227

Query: 241 VVAQVVYYFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIARMMGLPIEKLVVATNENDV 300
           ++AQVVYYFKG+F AT      VSFTVPSGNFGNVCAGH+ARMMGLPI +LVVATNENDV
Sbjct: 228 LLAQVVYYFKGWFEATGPQGGEVSFTVPSGNFGNVCAGHVARMMGLPIRRLVVATNENDV 287

Query: 301 LDEFFRTGAYRVRSAQDTYHTSSPSMDISKASNFERFVFDLLGRDPARVVQLFRD-VEQK 359
           LDEFFRTG YRVR A DT+ TSSPSMDISKASNFERFVFDL+GRD AR   LF D V + 
Sbjct: 288 LDEFFRTGVYRVRGAADTHETSSPSMDISKASNFERFVFDLVGRDGARTRSLFADEVGRT 347

Query: 360 GGFDLAASGDFA-RVAEFGFVSGRSTHADRIATIRDVFERYRTMIDTHTADGLKVAREHL 418
           G FDL+    FA   A+FGF SGRSTHADR+ATIRD   R+  ++DTHTADGLKVAREH 
Sbjct: 348 GRFDLSGDPAFADAAAKFGFASGRSTHADRLATIRDTDRRFAVLVDTHTADGLKVAREHR 407

Query: 419 RPGVPMVVLETAQPIKFGESIREALGQEPSRPAAFDGLEALPQRFEVVDANAQQVKDFIA 478
            PGVPMVVLETA PIKF  +I EALG+EP RPA F+G+E LP+R   + A+ + VK +IA
Sbjct: 408 EPGVPMVVLETALPIKFAATIVEALGREPDRPAKFEGIEQLPRRVVRMPADVEAVKRYIA 467

Query: 479 AH 480
            H
Sbjct: 468 EH 469


Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 707
Number of extensions: 24
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 471
Length adjustment: 33
Effective length of query: 450
Effective length of database: 438
Effective search space:   197100
Effective search space used:   197100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_038201034.1 Q392_RS02880 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.19493.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19493.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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